RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PLEKHS1Q5SXH7 462 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 CERS6Q6ZMG9 384 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 ZNF517Q6ZMY9 492 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 CCDC50Q8IVM0 306 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 OR4K2Q8NGD2 314 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 SSC4DQ8WTU2 575 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 N4BP2L2Q92802 583 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 OXNAD1Q96HP4 312 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 RBM41Q96IZ5 413 aaKnown RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 IP6K3Q96PC2 410 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 PPP1R2P1Q96PQ5 205 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 FERD3LQ96RJ6 166 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 RUFY1Q96T51 708 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 CHP1Q99653 195 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 ACTR5Q9H9F9 607 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 VPS37BQ9H9H4 285 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 ABHD10Q9NUJ1 306 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 SPTLC3Q9NUV7 552 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 MAP10Q9P2G4 905 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 FAM8A1Q9UBU6 413 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 PLEKHB1Q9UF11 243 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 CRLS1Q9UJA2 301 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 TCFL5Q9UL49 500 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 BTRCQ9Y297 605 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 ALG6Q9Y672 507 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 GSAPA4D1B5 854 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 C9J4A7 227 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 F5H423 210 aaPredicted RBP12.93□□□□□ -0.34
HMGB3-204ENST00000448905 H7C0C1 242 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 ZNF185O15231 689 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 DDAH2O95865 285 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 IGHEP01854 428 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 MSL3P1P0C860 447 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 PECAM1P16284 738 aaPredicted RBP12.93□□□□□ -0.34
HMGB3-204ENST00000448905 PRDX3P30048 256 aaKnown RBP12.93□□□□□ -0.34
HMGB3-204ENST00000448905 HADHAP40939 763 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 ATP5OP48047 213 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 KPNA2P52292 529 aaKnown RBP12.93□□□□□ -0.34
HMGB3-204ENST00000448905 CHAF1BQ13112 559 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 LLGL1Q15334 1064 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 NADK2Q4G0N4 442 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 GPR135Q8IZ08 494 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 DSELQ8IZU8 1212 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 ENDOVQ8N8Q3 282 aaKnown RBP12.93□□□□□ -0.34
HMGB3-204ENST00000448905 SLC38A9Q8NBW4 561 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 SPDYE1Q8NFV5 336 aaPredicted RBP12.93□□□□□ -0.34
HMGB3-204ENST00000448905 SGSM3Q96HU1 749 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 COPS8Q99627 209 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 C19orf43Q9BQ61 176 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 TLR10Q9BXR5 811 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 PADI2Q9Y2J8 665 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 HYOU1Q9Y4L1 999 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 ARL5AQ9Y689 179 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 RELNP78509 3460 aa12.93□□□□□ -0.34
HMGB3-204ENST00000448905 A6NL46 340 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 C2orf74A8MZ97 194 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 E7EQ34 232 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 GPR39O43194 453 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 CEACAM4O75871 244 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 ATP1B2P14415 290 aaPredicted RBP12.92□□□□□ -0.34
HMGB3-204ENST00000448905 ITGALP20701 1170 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 CTNNA2P26232 953 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 CETN2P41208 172 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 PTGIRP43119 386 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 CD151P48509 253 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 PTPN13Q12923 2485 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 IL10RAQ13651 578 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 GPR33Q49SQ1 333 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 CPZQ66K79 652 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 JMJD6Q6NYC1 403 aaPredicted RBP12.92□□□□□ -0.34
HMGB3-204ENST00000448905 SARM1Q6SZW1 724 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 RANBP10Q6VN20 620 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 RAB43Q86YS6 212 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 CNGA4Q8IV77 575 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 KATNAL2Q8IYT4 538 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 HM13Q8TCT9 377 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 HAUS1Q96CS2 278 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 FER1L6-AS2Q96M78 137 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 DHRS4Q9BTZ2 278 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 FICDQ9BVA6 458 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 TFB2MQ9H5Q4 396 aaKnown RBP12.92□□□□□ -0.34
HMGB3-204ENST00000448905 MVB12BQ9H7P6 319 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 LUC7LQ9NQ29 371 aaKnown RBP12.92□□□□□ -0.34
HMGB3-204ENST00000448905 GPR83Q9NYM4 423 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 C5AR2Q9P296 337 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 POMT2Q9UKY4 750 aa12.92□□□□□ -0.34
HMGB3-204ENST00000448905 TMEM150CB9EJG8 249 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 PEX12O00623 359 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 GAPDHSO14556 408 aaPredicted RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 ZNF189O75820 626 aaPredicted RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 ALPPP05187 535 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 GSTM1P09488 218 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 PTMSP20962 102 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 RBL1P28749 1068 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 MAGEA1P43355 309 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 UQCRFS1P47985 274 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 ARCN1P48444 511 aaKnown RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 HADHBP55084 474 aaKnown RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 ITGA1P56199 1179 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 GSTM4Q03013 218 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms