RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SPTBP11277 2137 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 OR51F1A6NGY5 319 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 SFTPCP11686 197 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 KPNA2P52292 529 aaKnown RBP20.21■□□□□ 0.83
SDC1-205ENST00000447124 CACNG1Q06432 222 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 CDC20Q12834 499 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 CCDC38Q502W7 563 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 DNTTIP2Q5QJE6 756 aaKnown RBP20.21■□□□□ 0.83
SDC1-205ENST00000447124 PWWP2BQ6NUJ5 590 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 OOSP2Q86WS3 158 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 D2HGDHQ8N465 521 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 C1orf54Q8WWF1 131 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 STARD8Q92502 1023 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 FERD3LQ96RJ6 166 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 CD180Q99467 661 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 RARRES3Q9UL19 164 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 COLEC10Q9Y6Z7 277 aa20.21■□□□□ 0.83
SDC1-205ENST00000447124 TLCD2A6NGC4 264 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 SLC28A2O43868 658 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 POLR2CP19387 275 aaPredicted RBP20.2■□□□□ 0.82
SDC1-205ENST00000447124 DLSTP36957 453 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 POLE2P56282 527 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 C16orf46Q6P387 395 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 KMT5CQ86Y97 462 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 GLIS1Q8NBF1 620 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 CATSPER2Q96P56 530 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 SLC25A18Q9H1K4 315 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 PDE7BQ9NP56 450 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 LNPEPQ9UIQ6 1025 aa20.2■□□□□ 0.82
SDC1-205ENST00000447124 PIKFYVEQ9Y2I7 2098 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 UBA6A0AVT1 1052 aaPredicted RBP20.19■□□□□ 0.82
SDC1-205ENST00000447124 CCDC162PA2VCL2 907 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 BTN3A3O00478 584 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 SUN1O94901 812 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 NTRK1P04629 796 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 TCN2P20062 427 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 NDUFS1P28331 727 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 FOXN2P32314 431 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 CCR10P46092 362 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 PREPP48147 710 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 HSD11B2P80365 405 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 TUBB3Q13509 450 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 SNX1Q13596 522 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 KRT33BQ14525 404 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 SIX1Q15475 284 aaPredicted RBP20.19■□□□□ 0.82
SDC1-205ENST00000447124 SKIDA1Q1XH10 827 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 DEFB109BQ30KR1 87 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 SEL1L2Q5TEA6 688 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 MEI1Q5TIA1 1274 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 LINC00523Q86TU6 105 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 OR13J1Q8NGT2 312 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 FAM117AQ9C073 453 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 ADNPQ9H2P0 1102 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 FGF21Q9NSA1 209 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 SMARCAL1Q9NZC9 954 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 SLC2A6Q9UGQ3 507 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 PADI1Q9ULC6 663 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 ZNF148Q9UQR1 794 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 HEBP2Q9Y5Z4 205 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 TENM4Q6N022 2769 aa20.19■□□□□ 0.82
SDC1-205ENST00000447124 FLNBO75369 2602 aaKnown RBP20.19■□□□□ 0.82
SDC1-205ENST00000447124 SEC16AO15027 2179 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 IFNB1P01574 187 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 FURINP09958 794 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 ZSCAN5DPP0CG00 497 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 MSNP26038 577 aaKnown RBP20.18■□□□□ 0.82
SDC1-205ENST00000447124 CD151P48509 253 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 ACY1Q03154 408 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 CRTC2Q53ET0 693 aaPredicted RBP20.18■□□□□ 0.82
SDC1-205ENST00000447124 ARMC6Q6NXE6 501 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 ACVR1CQ8NER5 493 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 STAMBPL1Q96FJ0 436 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 ZNF778Q96MU6 729 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 FCRL4Q96PJ5 515 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 FRMD8P1Q9BZ68 369 aaPredicted RBP20.18■□□□□ 0.82
SDC1-205ENST00000447124 TSGA10Q9BZW7 698 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 LHX9Q9NQ69 397 aa20.18■□□□□ 0.82
SDC1-205ENST00000447124 SLC9B1P1A6NJY1 282 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 SUV39H1O43463 412 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 KRT86O43790 486 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 KATNA1O75449 491 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 AP2A2O94973 939 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 ZBTB11O95625 1053 aaPredicted RBP20.17■□□□□ 0.82
SDC1-205ENST00000447124 CCNYL3P0C7X3 344 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 FDFT1P37268 417 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 ARL4DP49703 201 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 MC1RQ01726 317 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 CDH17Q12864 832 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 KCNAB2Q13303 367 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 RPS6KA1Q15418 735 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 GPR19Q15760 415 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 PRICKLE2Q7Z3G6 844 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 BPHLQ86WA6 291 aaPredicted RBP20.17■□□□□ 0.82
SDC1-205ENST00000447124 DNAAF3Q8N9W5 541 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 CT55Q8WUE5 264 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 LCN9Q8WX39 176 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 HDAC10Q969S8 669 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 ZNF501Q96CX3 271 aaPredicted RBP20.17■□□□□ 0.82
SDC1-205ENST00000447124 ALS2CR12Q96Q35 445 aa20.17■□□□□ 0.82
SDC1-205ENST00000447124 RUFY1Q96T51 708 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms