RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 RAB6CQ53S08 254 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CBWD3Q5JTY5 395 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 C1orf141Q5JVX7 400 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 KRT80Q6KB66 452 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RPUSD3Q6P087 351 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 KLC3Q6P597 504 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PACS1Q6VY07 963 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 Q75L30 129 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PLPPR4Q7Z2D5 763 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PTOV1Q86YD1 416 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 FAM114A1Q8IWE2 563 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 NAGSQ8N159 534 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 TTC30BQ8N4P2 665 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 MAB21L3Q8N8X9 362 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 KBTBD3Q8NAB2 608 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 POC1AQ8NBT0 407 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 OR13A1Q8NGR1 328 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 OR2AJ1Q8NGZ0 328 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 EXD1Q8NHP7 514 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DAZLQ92904 295 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CD101Q93033 1021 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 VPS33AQ96AX1 596 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RMDN1Q96DB5 314 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 SPACA9Q96E40 222 aaPredicted RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 OR6C1Q96RD1 312 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PKP4Q99569 1192 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 SEPHS2Q99611 448 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 LRRC1Q9BTT6 524 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RAB6CQ9H0N0 254 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DPAGT1Q9H3H5 408 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 OPA3Q9H6K4 179 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 SLA2Q9H6Q3 261 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DDX31Q9H8H2 851 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 FKRPQ9H9S5 495 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 OSER1Q9NX31 292 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DPP3Q9NY33 737 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DONSONQ9NYP3 566 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 GDE1Q9NZC3 331 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PTTG2Q9NZH5 202 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 NPAP1Q9NZP6 1156 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 TAAR2Q9P1P5 351 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RHCGQ9UBD6 479 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CRNNQ9UBG3 495 aaPredicted RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DDX25Q9UHL0 483 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 SLC24A2Q9UI40 661 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ZHX1Q9UKY1 873 aaPredicted RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 WBP11Q9Y2W2 641 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 GRIP1Q9Y3R0 1128 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 JRKLQ9Y4A0 524 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 SPIN1Q9Y657 262 aaPredicted RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 A0A0G2JNG1 304 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 EDDM13A0A1B0GTR0 161 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 TCRBV21S2A2A0A5A6 115 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 MED19A0JLT2 244 aaPredicted RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 ANKUB1A6NFN9 424 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 URADA6NGE7 173 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 TULP2O00295 520 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 UBE2CO00762 179 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 CAPN9O14815 690 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 SYNGR3O43761 229 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 SYNCRIPO60506 623 aaKnown RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 MED24O75448 989 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PDE9AO76083 593 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 GAS8-AS1O95177 125 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 GCNT3O95395 438 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PLGP00747 810 aaPredicted RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 LDLRP01130 860 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PCGF2P35227 344 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 ARCN1P48444 511 aaKnown RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 HOXA1P49639 335 aaPredicted RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 MMP15P51511 669 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 CCR3P51677 355 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PPP5CP53041 499 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 DLX5P56178 289 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PITX1P78337 314 aaPredicted RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PRKAA1Q13131 559 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 CAMK2DQ13557 499 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 KIR2DS5Q14953 304 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 NR1D2Q14995 579 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 TNIP1Q15025 636 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 KYNUQ16719 465 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 DUOXA1Q1HG43 343 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 KRTAP24-1Q3LI83 254 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 TCP11X2Q5H9J9 407 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 KRBOX4Q5JUW0 171 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 C9orf50Q5SZB4 431 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PLXDC2Q6UX71 529 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 GDPD4Q6W3E5 623 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 DENND5BQ6ZUT9 1274 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 PIWIL4Q7Z3Z4 852 aaKnown RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 CENPVQ7Z7K6 275 aaPredicted RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 DSG4Q86SJ6 1040 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 ADIPOR2Q86V24 386 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 ZNF595Q8IYB9 648 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 CFAP206Q8IYR0 622 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 METTL27Q8N6F8 245 aaPredicted RBP2.32□□□□□ -2.04
PTPRC-208ENST00000427110 SLC4A11Q8NBS3 891 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 DMBX1Q8NFW5 382 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 OR10S1Q8NGN2 331 aa2.32□□□□□ -2.04
PTPRC-208ENST00000427110 TAS1R2Q8TE23 839 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms