RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SKOR2Q2VWA4 1001 aaPredicted RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 BCL7AQ4VC05 210 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 ITPRIPL1Q6GPH6 555 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 CAPRIN2Q6IMN6 1127 aaKnown RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 TCTN3Q6NUS6 607 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 CDKL3Q8IVW4 592 aaPredicted RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 ALG3Q92685 438 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 DNAJC1Q96KC8 554 aaKnown RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 FERD3LQ96RJ6 166 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 TBL1YQ9BQ87 522 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 CHST8Q9H2A9 424 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 KCND1Q9NSA2 647 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 ACSL5Q9ULC5 683 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 REXO2Q9Y3B8 237 aaKnown RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 PCDHA3Q9Y5H8 950 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 C5orf60A6NFR6 353 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 C21orf140B9A014 251 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 BTN3A3O00478 584 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 BTN3A1O00481 513 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CPNE3O75131 537 aaKnown RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 ZBTB11O95625 1053 aaPredicted RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 PYGMP11217 842 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 ATP1B2P14415 290 aaPredicted RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 ST6GAL1P15907 406 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CDH3P22223 829 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 MC4RP32245 332 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 UQCRFS1P47985 274 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 TUBB4BP68371 445 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 SEMA5AQ13591 1074 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 LAMB3Q13751 1172 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 TUBB2AQ13885 445 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 PRPSAP1Q14558 356 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 ZRANB3Q5FWF4 1079 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 NAPRTQ6XQN6 538 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 TAS2R42Q7RTR8 314 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 NXPE1Q8N323 547 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CLDN19Q8N6F1 224 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 ACRBPQ8NEB7 543 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 OR1L3Q8NH93 324 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 LCN9Q8WX39 176 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 MIB2Q96AX9 1013 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 SPATA13Q96N96 652 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CD180Q99467 661 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 HGH1Q9BTY7 390 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 TUBB2BQ9BVA1 445 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 LACRTQ9GZZ8 138 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 LUZP4Q9P127 313 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 FARSAQ9Y285 508 aaKnown RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 TNRC6AQ8NDV7 1962 aaKnown RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 A0A0U1RQJ8 604 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 TMEM150CB9EJG8 249 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 LDB2O43679 373 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 METTL18O95568 372 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CRTAMO95727 393 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 ITGALP20701 1170 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CYLC1P35663 651 aaPredicted RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 PTGIRP43119 386 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 PRLHRP49683 370 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 RPS15P62841 145 aaKnown RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 PDE1BQ01064 536 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 BRD3Q15059 726 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 UGT8Q16880 541 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 PTCHD3Q3KNS1 767 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 NADK2Q4G0N4 442 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 PLEKHS1Q5SXH7 462 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 HIST2H2BCQ6DN03 193 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 RAD9BQ6WBX8 426 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 TRIM73Q86UV7 250 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 SERPINA9Q86WD7 417 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 KMT5CQ86Y97 462 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 ENDOVQ8N8Q3 282 aaKnown RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 HM13Q8TCT9 377 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 CLIP3Q96DZ5 547 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 LINC00615Q96LM1 132 aaPredicted RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 COPS8Q99627 209 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 SRMSQ9H3Y6 488 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 COG4Q9H9E3 785 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 POMT2Q9UKY4 750 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 PACSIN2Q9UNF0 486 aaPredicted RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 AAR2Q9Y312 384 aaKnown RBP11.25□□□□□ -0.61
USP4-204ENST00000416417 COLEC10Q9Y6Z7 277 aa11.25□□□□□ -0.61
USP4-204ENST00000416417 OR51F1A6NGY5 319 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 A6NL46 340 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 AGAP14A8MT82 685 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 RALBP11234 206 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 PRDX3P30048 256 aaKnown RBP11.24□□□□□ -0.61
USP4-204ENST00000416417 RWDD2BP57060 319 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 COPS2P61201 443 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 PRKAA1Q13131 559 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 RAPSNQ13702 412 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 POU6F1Q14863 301 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 ZNF658BQ4V348 819 aaPredicted RBP11.24□□□□□ -0.61
USP4-204ENST00000416417 TMTC4Q5T4D3 741 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 CYB5D1Q6P9G0 228 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 SNX20Q7Z614 316 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 PIANPQ8IYJ0 282 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 CCDC170Q8IYT3 715 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 FAM71DQ8N9W8 422 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 ACVR1CQ8NER5 493 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 OR52E1Q8NGJ3 308 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms