RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KIAA1217Q5T5P2 1943 aa18.23■□□□□ 0.51
USP48-204ENST00000400301 HHLA1C9JL84 531 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 PRPS2P11908 318 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 IGFBP5P24593 272 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 NFKB2Q00653 900 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 TRIM60Q495X7 471 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 CPTPQ5TA50 214 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 BNIPLQ7Z465 357 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 ZNF598Q86UK7 904 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 L3HYPDHQ96EM0 354 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 KLHL32Q96NJ5 620 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 ARNT2Q9HBZ2 717 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 RAD18Q9NS91 495 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 GALNT8Q9NY28 637 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 NUMBLQ9Y6R0 609 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 FPGTO14772 594 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 DENRO43583 198 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 DLGAP3O95886 979 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 ELFN1P0C7U0 828 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 LAG3P18627 525 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 RPL34P49207 117 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 NR1D2Q14995 579 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 RAET1GQ6H3X3 334 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 NANOGP8Q6NSW7 305 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 ZNF605Q86T29 641 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 NANOGQ9H9S0 305 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 LIN28AQ9H9Z2 209 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 LDB2O43679 373 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 POP4O95707 220 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 CLLU1OSQ5K130 101 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 TPGS2Q68CL5 300 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 LSMEM2Q8N112 164 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 ZNF461Q8TAF7 563 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 GIPC3Q8TF64 312 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 POP5Q969H6 163 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 FBXL20Q96IG2 436 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 C6orf62Q9GZU0 229 aaPredicted RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 MTIF3Q9H2K0 278 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 CCM2LQ9NUG4 571 aaPredicted RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 DDX28Q9NUL7 540 aaKnown RBP18.22■□□□□ 0.51
USP48-204ENST00000400301 GIMAP4Q9NUV9 329 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 DNAJB9Q9UBS3 223 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 MAPRE3Q9UPY8 281 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 SPO11Q9Y5K1 396 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 LOC730098B7Z3J9 87 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 PPP6CO00743 305 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 BCKDKO14874 412 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 SUV39H1O43463 412 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 GKP32189 559 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 GPR1P46091 355 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 RXRGP48443 463 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 DENND5AQ6IQ26 1287 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 CYP4Z1Q86W10 505 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 RASSF1Q9NS23 344 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 VPS51Q9UID3 782 aa18.22■□□□□ 0.51
USP48-204ENST00000400301 GREB1LQ9C091 1923 aaPredicted RBP18.21■□□□□ 0.51
USP48-204ENST00000400301 SGTAO43765 313 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 XYLBO75191 536 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 SERPINA1P01009 418 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 CYP2A13Q16696 494 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 TMBIM1Q969X1 311 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 PHF12Q96QT6 1004 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 ACAT2Q9BWD1 397 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 KPNA4O00629 521 aaPredicted RBP18.21■□□□□ 0.51
USP48-204ENST00000400301 MYCLP1P12525 358 aaPredicted RBP18.21■□□□□ 0.51
USP48-204ENST00000400301 ADRA1AP35348 466 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 EMX2Q04743 252 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 SPANXN4Q5MJ08 99 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 ZDHHC20Q5W0Z9 365 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 TMEM199Q8N511 208 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 CSGALNACT1Q8TDX6 532 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 ZNF382Q96SR6 550 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 IKZF3Q9UKT9 509 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 DHRS7Q9Y394 339 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 H3BN98 237 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 PRKD3O94806 890 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 GJA1P17302 382 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 HPCAP84074 193 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 TMPRSS11BQ86T26 416 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 OR52B6Q8NGF0 335 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 TIFAQ96CG3 184 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 TMEM175Q9BSA9 504 aa18.21■□□□□ 0.51
USP48-204ENST00000400301 PDP1Q9P0J1 537 aaPredicted RBP18.21■□□□□ 0.51
USP48-204ENST00000400301 NRXN2Q9P2S2 1712 aa18.21■□□□□ 0.5
USP48-204ENST00000400301 A0A1W2PQ45 241 aaPredicted RBP18.2■□□□□ 0.5
USP48-204ENST00000400301 A0A1W2PQY0 241 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 CAPN3P20807 821 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 FOXA1P55317 472 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 BLOC1S3Q6QNY0 202 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 TSPEARQ8WU66 669 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 AIG1Q9NVV5 245 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 ZDHHC7Q9NXF8 308 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 VPS4AQ9UN37 437 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 LOC100506127A0A0U1RQW1 187 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 ANKDD1BA6NHY2 528 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 WASH4PA8MWX3 477 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 NME4O00746 187 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 FKTNO75072 461 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 MTX2O75431 263 aa18.2■□□□□ 0.5
USP48-204ENST00000400301 ANGPTL1O95841 491 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms