RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 WNT5AP41221 380 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 GRIA3P42263 894 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SERPINH1P50454 418 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 VCPP55072 806 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TAS2R40P59535 323 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 GPC5P78333 572 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SPIBQ01892 262 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TAP2Q03519 686 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 FOXF2Q12947 444 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ABRQ12979 859 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PDZK1IP1Q13113 114 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 DNASE1L3Q13609 305 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 VEPH1Q14D04 833 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 HIST2H2ACQ16777 129 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 EDRF1Q3B7T1 1238 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CDONQ4KMG0 1287 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ATP13A5Q4VNC0 1218 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PAPD7Q5XG87 772 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CLEC2AQ6UVW9 174 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CES3Q6UWW8 571 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 IL20RBQ6UXL0 311 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 WDR88Q6ZMY6 472 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF788Q6ZQV5 615 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PRSS45Q7RTY3 260 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TSPAN33Q86UF1 283 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CAND1Q86VP6 1230 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 BBS5Q8N3I7 341 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 FAM109AQ8N4B1 249 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NIPA2Q8N8Q9 360 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 STEAP2Q8NFT2 490 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NCOA7Q8NI08 942 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SUN5Q8TC36 379 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM68Q96MH6 324 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SECISBP2Q96T21 854 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TIMP4Q99727 224 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SSX3Q99909 188 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 BCL7BQ9BQE9 202 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM117Q9H0C3 514 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 STMN4Q9H169 189 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 EHD1Q9H4M9 534 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 VCPKMTQ9H867 229 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 LRRC40Q9H9A6 602 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SAP30LQ9HAJ7 183 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RPRD1BQ9NQG5 326 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ENTPD7Q9NQZ7 604 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 IL17RBQ9NRM6 502 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 MTMR10Q9NXD2 777 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 KCNN3Q9UGI6 736 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 MAD2L2Q9UI95 211 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 DNPEPQ9ULA0 475 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 DTX4Q9Y2E6 619 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NOSIPQ9Y314 301 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PKP3Q9Y446 797 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 WNT6Q9Y6F9 365 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SPACA6W5XKT8 324 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 FER1L4A9Z1Z3 1794 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 C13orf42A0A1B0GVH6 325 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NCF1BA6NI72 391 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NCF1CA8MVU1 366 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 H3BQ06 376 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PLK4O00444 970 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PPP6CO00743 305 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SLC16A3O15427 465 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SPRY2O43597 315 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SSX5O60225 188 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CACNG3O60359 315 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 C1QL1O75973 258 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TOMM70O94826 608 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SERPINC1P01008 464 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 WT1P19544 449 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NR1D1P20393 614 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 GSTM2P28161 218 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 HTR6P50406 440 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SRP54P61011 504 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RAE1P78406 368 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TNFRSF17Q02223 184 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ACY1Q03154 408 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RELQ04864 619 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SPP2Q13103 211 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 EFTUD2Q15029 972 aaKnown RBP eCLIP4.04□□□□□ -1.765e-16■■□□□ 13.9
HMGB1-204ENST00000399489 SHBQ15464 509 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC57Q2TAC2 916 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 KLHL26Q53HC5 615 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CFAP157Q5JU67 520 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TSTD2Q5T7W7 516 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TXNRD3NBQ6F5E7 133 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CASC4Q6P4E1 433 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PODNL1Q6PEZ8 512 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 METAP1DQ6UB28 335 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SLC39A5Q6ZMH5 540 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PEG10Q86TG7 708 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 LDB1Q86U70 411 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CUZD1Q86UP6 607 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ARID3BQ8IVW6 561 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CLEC1AQ8NC01 280 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RAPGEF5Q92565 580 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 MOAP1Q96BY2 351 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PRICKLE1Q96MT3 831 aaPredicted RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms