RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FCGR1BQ92637 280 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 C7orf26Q96N11 449 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 RC3H2Q9HBD1 1191 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 POLMQ9NP87 494 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 MRPS30Q9NP92 439 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 PREX1Q8TCU6 1659 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 L7N2F9 121 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 PLOD2O00469 737 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SYN3O14994 580 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 MFSD11O43934 449 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 TACSTD2P09758 323 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 IL7RP16871 459 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 AP1S1P61966 158 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 VAMP2P63027 116 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SP140Q13342 867 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 KCTD8Q6ZWB6 473 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ZCCHC10Q8TBK6 192 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 KAZALD1Q96I82 304 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 RIPOR3Q96MK2 946 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SCGB3A2Q96PL1 93 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 MAGEH1Q9H213 219 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SLCO1B3Q9NPD5 702 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM198AQ9UFP1 575 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF180Q9UJW8 692 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 KCNU1A8MYU2 1149 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 TM7SF2O76062 418 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 NELFEP18615 380 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 GRSF1Q12849 480 aaKnown RBP eCLIP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 IFI44LQ53G44 452 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 UBXN11Q5T124 520 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 OR8H1Q8NGG4 311 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 CCDC107Q8WV48 283 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 CENPNQ96H22 339 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC25A51Q9H1U9 297 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 PCDHGB1Q9Y5G3 927 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 FOSL2P15408 326 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ILDR1Q86SU0 546 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM13CQ8NE31 585 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 GTPBP3Q969Y2 492 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 IFT27Q9BW83 186 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ATG10Q9H0Y0 220 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 FANCFQ9NPI8 374 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 THUMPD1Q9NXG2 353 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 AASSQ9UDR5 926 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 TLL2Q9Y6L7 1015 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 A0A1B0GVM2 712 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 TCAF2A6NFQ2 919 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 GADD45GO95257 159 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 RPLP0P05388 317 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SEC13P55735 322 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 INTS6LQ5JSJ4 861 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 C1orf189Q5VU69 101 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 MSL3Q8N5Y2 521 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 PMEPA1Q969W9 287 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 PSKH2Q96QS6 385 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 DPEP2Q9H4A9 486 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 RORCP51449 518 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 CDH12P55289 794 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 EIF2S3LQ2VIR3 472 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 HERVK_113Q902F9 699 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 EBPLQ9BY08 206 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SERINC1Q9NRX5 453 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 OR2AG2A6NM03 316 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 VSTM5A8MXK1 200 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 NOL4O94818 638 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 LINGO3P0C6S8 592 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 ETS2P15036 469 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GNSP15586 552 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF3P17036 446 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 OR3A3P47888 321 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 OR3A2P47893 321 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TAF1AQ15573 450 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 METTL21CQ5VZV1 264 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SMARCD3Q6STE5 483 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 DGLUCYQ7Z3D6 616 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SERPINA9Q86WD7 417 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 REM2Q8IYK8 340 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SDR16C5Q8N3Y7 309 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GLB1L3Q8NCI6 653 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GLIS3Q8NEA6 775 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 BRSK1Q8TDC3 778 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 WDR55Q9H6Y2 383 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 TIMM22Q9Y584 194 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 NUAK1O60285 661 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 ATF6P18850 670 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 ICAM3P32942 547 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 PPIGQ13427 754 aaKnown RBP eCLIP12.61□□□□□ -0.392e-6■■□□□ 13.4
CCDC88C-204ENST00000389857 GFOD2Q3B7J2 385 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 C2orf15Q8WU43 125 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 C12orf66Q96MD2 445 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM210AQ96ND0 272 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 NODALQ96S42 347 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 IL12RB2Q99665 862 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 HEPHQ9BQS7 1158 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC28A3Q9HAS3 691 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 PLGP00747 810 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 COL6A1P12109 1028 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 CAP1Q01518 475 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 GNA12Q03113 381 aa12.61□□□□□ -0.39
CCDC88C-204ENST00000389857 FIP1L1Q6UN15 594 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms