RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MMADHCQ9H3L0 296 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 RMI1Q9H9A7 625 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 IL26Q9NPH9 171 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 MBNL1Q9NR56 388 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 IGSF5Q9NSI5 407 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 SMOXQ9NWM0 555 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 COQ6Q9Y2Z9 468 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 RAP2CQ9Y3L5 183 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 PCDHGB2Q9Y5G2 931 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 GLYATL1P3A0A0U1RQE8 302 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 OR51F1A6NGY5 319 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 AGAP14A8MT82 685 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 S1PR4O95977 384 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 CHRNGP07510 517 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 PIRTP0C851 137 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 MPSTP25325 297 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 PPARGP37231 505 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 PLA2G5P39877 138 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 RPL14P50914 215 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 ZNF140P52738 457 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 LIMK1P53667 647 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 NAGLUP54802 743 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 SEMG2Q02383 582 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 ILF2Q12905 390 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 PRKAA1Q13131 559 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 PEX6Q13608 980 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 CSHL1Q14406 222 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 ZNF423Q2M1K9 1284 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 RAET1GQ6H3X3 334 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 PRR23CQ6ZRP0 262 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 ASCL5Q7RTU5 278 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 LDB1Q86U70 411 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 PARGQ86W56 976 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 GPR26Q8NDV2 337 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 OR4K2Q8NGD2 314 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 ULK4Q96C45 1275 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 COX14Q96I36 57 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 HIC2Q96JB3 615 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 DNAJC1Q96KC8 554 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 TTC1Q99614 292 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 RIOK2Q9BVS4 552 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 UNKQ9C0B0 810 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 DENND2DQ9H6A0 471 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 GPAMQ9HCL2 828 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 DNAAF2Q9NVR5 837 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 MARCH4Q9P2E8 410 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 VWA7Q9Y334 891 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 L3MBTL1Q9Y468 752 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 DGKBQ9Y6T7 804 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 VPS13AQ96RL7 3174 aa10.02□□□□□ -0.8
VPS53-202ENST00000389040 A0A1B0GVT2 93 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 CCDC162PA2VCL2 907 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 KLHL33A6NCF5 533 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 H3BM21 787 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 MATN2O00339 956 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 CD3EAPO15446 510 aaKnown RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 GFRA3O60609 400 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 GOT2P00505 430 aaKnown RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 CSF2P04141 144 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 WNT1P04628 370 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 PCCBP05166 539 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 ATP5F1P24539 256 aaPredicted RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 CLDN2P57739 230 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 HNRNPKP61978 463 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS53-202ENST00000389040 CDK3Q00526 305 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 SPEM2Q0P670 501 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 GRIK2Q13002 908 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 SUZ12Q15022 739 aaKnown RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 PTPRRQ15256 657 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 KIF19Q2TAC6 998 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 ARL13AQ5H913 290 aaPredicted RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 LDLRAP1Q5SW96 308 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 SWT1Q5T5J6 900 aaKnown RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 WLSQ5T9L3 541 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 AGAP9Q5VTM2 703 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 LYPLAL1Q5VWZ2 237 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 MRNIPQ6NTE8 343 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 KLC3Q6P597 504 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 CERS6Q6ZMG9 384 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 HOMEZQ8IX15 550 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 ARHGAP24Q8N264 748 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 PNPLA1Q8N8W4 532 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 RBM15BQ8NDT2 890 aaKnown RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 OR13H1Q8NG92 308 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 GPR150Q8NGU9 434 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 FBXO27Q8NI29 283 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 AGR3Q8TD06 166 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 SCAMP4Q969E2 229 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 MOCOSQ96EN8 888 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 UBXN10Q96LJ8 280 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 WDR92Q96MX6 357 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 ELF4Q99607 663 aaPredicted RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 SPATA16Q9BXB7 569 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 ZCCHC2Q9C0B9 1178 aaKnown RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 SUDS3Q9H7L9 328 aaPredicted RBP10.02□□□□□ -0.81
VPS53-202ENST00000389040 FZD3Q9NPG1 666 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 ACSS2Q9NR19 701 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 EML5Q05BV3 1969 aa10.02□□□□□ -0.81
VPS53-202ENST00000389040 LNP1A1A4G5 178 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 HDAC3O15379 428 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms