RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MCOLN3Q8TDD5 553 aa20.81■□□□□ 0.92
UPF3A-202ENST00000375299 STARD8Q92502 1023 aa20.81■□□□□ 0.92
UPF3A-202ENST00000375299 YIPF6Q96EC8 236 aa20.81■□□□□ 0.92
UPF3A-202ENST00000375299 KLHL25Q9H0H3 589 aa20.81■□□□□ 0.92
UPF3A-202ENST00000375299 BCKDKO14874 412 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 MUSKO15146 869 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PRKD3O94806 890 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 NDST3O95803 873 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 TSPAN12O95859 305 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 CAPN1P07384 714 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 MSH3P20585 1137 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PRKACGP22612 351 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 FAM110CQ1W6H9 321 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ZNF362Q5T0B9 420 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 AFTPHQ6ULP2 937 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 OR52E4Q8NGH9 312 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 METTL6Q8TCB7 284 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PHF10Q8WUB8 498 aaKnown RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 SLC13A3Q8WWT9 602 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 RHBDF1Q96CC6 855 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 THUMPD3Q9BV44 507 aaKnown RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PCDH12Q9NPG4 1184 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ANKMY1Q9P2S6 941 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PMF1-BGLAPU3KQ54 211 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ELOVL7A1L3X0 281 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 CXCR6O00574 342 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 SCELO95171 688 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ANGPTL1O95841 491 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PABPC1P11940 636 aaKnown RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ACVR2AP27037 513 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ALDH4A1P30038 563 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ARL1P40616 181 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ZNF140P52738 457 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 TBX4P57082 545 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 LSM3P62310 102 aaKnown RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 IL5RAQ01344 420 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 HIST2H2ACQ16777 129 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 PTPRNQ16849 979 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 RFX4Q33E94 735 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 DSG4Q86SJ6 1040 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 DCP2Q8IU60 420 aaKnown RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 EFHD2Q96C19 240 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 NSMCE3Q96MG7 304 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 HBEGFQ99075 208 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 RMND5AQ9H871 391 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 TMEFF2Q9UIK5 374 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-202ENST00000375299 ORC6Q9Y5N6 252 aa20.8■□□□□ 0.92
UPF3A-202ENST00000375299 M0QX08 132 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 PFDN6O15212 129 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 VPS26AO75436 327 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 OXSR1O95747 527 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ZNF235Q14590 738 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 AP5B1Q2VPB7 878 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ZC3H12BQ5HYM0 836 aaKnown RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 TMEM236Q5W0B7 351 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 NEK10Q6ZWH5 1172 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 P2RY8Q86VZ1 359 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 SPATA2LQ8IUW3 424 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ARL10Q8N8L6 244 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 SIDT2Q8NBJ9 832 aaKnown RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 DYNC2LI1Q8TCX1 351 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 IGSF8Q969P0 613 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 REXO5Q96IC2 774 aaKnown RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 IKZF5Q9H5V7 419 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ERVK-18Q9QC07 812 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 TRMT6Q9UJA5 497 aaKnown RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 IGLV3-10A0A075B6K4 115 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 RAMP2O60895 175 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 B3GAT3O94766 335 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ITGAMP11215 1152 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 GRK3P35626 688 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 VBP1P61758 197 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 SERINC3Q13530 473 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 RAPSNQ13702 412 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 KCNJ8Q15842 424 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 LINGO1Q96FE5 620 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ZNF300Q96RE9 604 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 BTBD2Q9BX70 525 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 ALOXE3Q9BYJ1 711 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 SPC25Q9HBM1 224 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 SCUBE2Q9NQ36 999 aa20.79■□□□□ 0.92
UPF3A-202ENST00000375299 SCHIP1Q9P0W5 487 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-202ENST00000375299 C17orf102A2RUQ5 167 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 ZNF865P0CJ78 1059 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-202ENST00000375299 FSHRP23945 695 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 BEX3Q00994 111 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 TSPY1Q01534 308 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 CACNB2Q08289 660 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-202ENST00000375299 RFTN2Q52LD8 501 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-202ENST00000375299 DEPDC1Q5TB30 811 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 HASPINQ8TF76 798 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 GTF2H4Q92759 462 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 MAGIXQ9H6Y5 334 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 FLRT1Q9NZU1 646 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 PCDHGA10Q9Y5H3 936 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 NIPSNAP2O75323 286 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 PKMP14618 531 aaKnown RBP20.78■□□□□ 0.92
UPF3A-202ENST00000375299 CD6P30203 668 aa20.78■□□□□ 0.92
UPF3A-202ENST00000375299 MAP2K4P45985 399 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms