RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 KRT33BQ14525 404 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 ITIH4Q14624 930 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 CCDC38Q502W7 563 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 BORAQ6PGQ7 559 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 GALNT6Q8NCL4 622 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 CATSPER2Q96P56 530 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 FCRL4Q96PJ5 515 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 PDE7BQ9NP56 450 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 RIMKLBQ9ULI2 386 aa21.14■□□□□ 0.97
CCDC28B-201ENST00000373602 CFAP46Q8IYW2 2715 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 ZNF462Q96JM2 2506 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 HEATR9A2RTY3 570 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 CCDC162PA2VCL2 907 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 OR51F1A6NGY5 319 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 GAS8O95995 478 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 ETS1P14921 441 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 FOXN2P32314 431 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 GRIA1P42261 906 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 NSG1P42857 185 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 LMAN1P49257 510 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 HSD11B2P80365 405 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 ACY1Q03154 408 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 TUBB3Q13509 450 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 KCNAB1Q14722 419 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 SIX1Q15475 284 aaPredicted RBP21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 ARMC6Q6NXE6 501 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 CERS6Q6ZMG9 384 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 PPP1R21Q6ZMI0 780 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 PRUNE1Q86TP1 453 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 BPHLQ86WA6 291 aaPredicted RBP21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 CARFQ8N187 725 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 D2HGDHQ8N465 521 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 ACVR1CQ8NER5 493 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 OR4E2Q8NGC2 313 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 OR13J1Q8NGT2 312 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 RNF31Q96EP0 1072 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 FERD3LQ96RJ6 166 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 RANBP9Q96S59 729 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 STARD5Q9NSY2 213 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 GEMIN8Q9NWZ8 242 aaKnown RBP21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 SMARCAL1Q9NZC9 954 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 PAK5Q9P286 719 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 RARRES3Q9UL19 164 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 PRSS21Q9Y6M0 314 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 PIEZO2Q9H5I5 2752 aa21.13■□□□□ 0.97
CCDC28B-201ENST00000373602 E7EVH7 732 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 IFRD1O00458 451 aaPredicted RBP21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 CCDC175P0C221 793 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 EBLN1P0CF75 366 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 F8A1P23610 371 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 PDHA2P29803 388 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 ARL4DP49703 201 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 KPNA2P52292 529 aaKnown RBP21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 MC1RQ01726 317 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 CDC20Q12834 499 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 LAMB3Q13751 1172 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 CCNG2Q16589 344 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 CRTC2Q53ET0 693 aaPredicted RBP21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 ZNF449Q6P9G9 518 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 PACS1Q6VY07 963 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 CCDC89Q8N998 374 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 GLIS1Q8NBF1 620 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 STARD8Q92502 1023 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 STAMBPL1Q96FJ0 436 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 LZTFL1Q9NQ48 299 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 CASS4Q9NQ75 786 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 RAB6BQ9NRW1 208 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 LNPEPQ9UIQ6 1025 aa21.12■□□□□ 0.97
CCDC28B-201ENST00000373602 QSOX1O00391 747 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 TERTO14746 1132 aaKnown RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 TIAF1O95411 115 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 ZBTB11O95625 1053 aaPredicted RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 POLR2CP19387 275 aaPredicted RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 ADRA1DP25100 572 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 DLSTP36957 453 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 PREPP48147 710 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 ARCN1P48444 511 aaKnown RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 ACVR1Q04771 509 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 NFATC3Q12968 1075 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 PRKAA1Q13131 559 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 TSTD2Q5T7W7 516 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 DRICH1Q6PGQ1 229 aaPredicted RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 LRRC8AQ8IWT6 810 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 LCN9Q8WX39 176 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 HDAC10Q969S8 669 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 ADNPQ9H2P0 1102 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 SRMSQ9H3Y6 488 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 TFB2MQ9H5Q4 396 aaKnown RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 MVB12BQ9H7P6 319 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 FGF21Q9NSA1 209 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 SLC2A6Q9UGQ3 507 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 CROTQ9UKG9 612 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 DRG1Q9Y295 367 aaKnown RBP21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 PIKFYVEQ9Y2I7 2098 aa21.11■□□□□ 0.97
CCDC28B-201ENST00000373602 MATN2O00339 956 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 LIN7AO14910 233 aaPredicted RBP21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 MT-ND3P03897 115 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 PRKAR1AP10644 381 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 TCN2P20062 427 aa21.1■□□□□ 0.97
CCDC28B-201ENST00000373602 OAS2P29728 719 aaKnown RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms