RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ASGR2P07307 311 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ACP5P13686 325 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ACSL1P33121 698 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MAGEA11P43364 429 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SLC6A11P48066 632 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SLC11A1P49279 550 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ATP12AP54707 1039 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 EPHA5P54756 1037 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CAV3P56539 151 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SNRPD2P62316 118 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 TUBB3Q13509 450 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ZNF268Q14587 947 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 HSP90AA4PQ58FG1 418 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 TMEM240Q5SV17 173 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ANXA8L1Q5VT79 327 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 OR2A2Q6IF42 318 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 GPIHBP1Q8IV16 184 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SLC22A9Q8IVM8 553 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.04□□□□□ -1.76
USH2A-202ENST00000366942 GPR137CQ8N3F9 429 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 BPIFB2Q8N4F0 458 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SCCPDHQ8NBX0 429 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ZNF564Q8TBZ8 553 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 C16orf78Q8WTQ4 265 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 KBTBD7Q8WVZ9 684 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 KIAA1191Q96A73 305 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 VPS35Q96QK1 796 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 C10orf88Q9H8K7 445 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SPATS2LQ9NUQ6 558 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 OLAHQ9NV23 265 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PLK2Q9NYY3 685 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PPP4R1LQ9P1A2 415 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ADAM21Q9UKJ8 722 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 FAM86C2PA6NEL3 165 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 C19orf67A6NJJ6 358 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ARHGAP33O14559 1287 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CYBAP13498 195 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 RHOQP17081 205 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 EIF2B2P49770 351 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 AFF1P51825 1210 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 ITGA1P56199 1179 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 BNIP1Q12981 228 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 IKZF1Q13422 519 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SEC23BQ15437 767 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CST6Q15828 149 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 BTBD16Q32M84 506 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 IDNKQ5T6J7 187 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 C9orf64Q5T6V5 341 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 BEND5Q7L4P6 421 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 OR4K1Q8NGD4 311 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 LRRC20Q8TCA0 184 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ZDHHC1Q8WTX9 485 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 HDAC2Q92769 488 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 SUSD3Q96L08 255 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ATF6BQ99941 703 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 NMRAL1Q9HBL8 299 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 AGPAT3Q9NRZ7 376 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 DECR2Q9NUI1 292 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 LACTBL1A8MY62 500 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 HACD1B0YJ81 288 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CLOCKO15516 846 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CSO75390 466 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 LRATO95237 230 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 LY86O95711 162 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 PRKCGP05129 697 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RNH1P13489 461 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 GLB1P16278 677 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 MGAT1P26572 445 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CPOXP36551 454 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 FAAP100Q0VG06 881 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 KLRB1Q12918 225 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SLC14A1Q13336 389 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 MTM1Q13496 603 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SPIN3Q5JUX0 258 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SAMD4BQ5PRF9 694 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 BLOC1S3Q6QNY0 202 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CLEC2AQ6UVW9 174 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CAPN12Q6ZSI9 719 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SYDE1Q6ZW31 735 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 SLC9A9Q8IVB4 645 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 GJC3Q8NFK1 279 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 JPH3Q8WXH2 748 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 USP6NLQ92738 828 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 GGHQ92820 318 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 KLHL32Q96NJ5 620 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TGM7Q96PF1 710 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 GPER1Q99527 375 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 HGH1Q9BTY7 390 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DHRS4Q9BTZ2 278 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 FICDQ9BVA6 458 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ASPNQ9BXN1 380 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ACTL8Q9H568 366 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 BRF2Q9HAW0 419 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SNX15Q9NRS6 342 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 RASSF1Q9NS23 344 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DDX28Q9NUL7 540 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 C14orf105Q9NVL8 296 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 IMPAD1Q9NX62 359 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 DNAI1Q9UI46 699 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 PCDHA13Q9Y5I0 950 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms