RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 TRMT11Q7Z4G4 463 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 ARPINQ7Z6K5 226 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 IL17RCQ8NAC3 791 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 SYTL2Q9HCH5 934 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 PACSIN3Q9UKS6 424 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 FAM50BQ9Y247 325 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 H0Y858 1186 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 GLULP15104 373 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 NTSR1P30989 418 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 RPL5P46777 297 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 PKNOX1P55347 436 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 DCDC1P59894 354 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 CSHL1Q14406 222 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 ACOX1Q15067 660 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 TMEM198Q66K66 360 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 TRIM67Q6ZTA4 783 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 PIM3Q86V86 326 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 NXPE1Q8N323 547 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 MOCOSQ96EN8 888 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 HDAC8Q9BY41 377 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 GNPTGQ9UJJ9 305 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 CNOT11Q9UKZ1 510 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 MED16Q9Y2X0 877 aa12.95□□□□□ -0.34
SQSTM1-201ENST00000360718 DOCK9Q9BZ29 2069 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 H3BMM5 538 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 DNAJA2O60884 412 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 TNFAIP8O95379 198 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 ADH1BP00325 375 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 RBP1P09455 135 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 CHRM3P20309 590 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 COL9A1P20849 921 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 DRD3P35462 400 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 ETV3P41162 512 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 MAP7Q14244 749 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 PTK2BQ14289 1009 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 TLR1Q15399 786 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 ZNF284Q2VY69 593 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 HABP4Q5JVS0 413 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 PTRHD1Q6GMV3 140 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 LIPIQ6XZB0 460 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 Q6ZVL8 140 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 SPATA24Q86W54 205 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 RAVER1Q8IY67 606 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 HEXDCQ8WVB3 486 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 SCAMP4Q969E2 229 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 DGCR14Q96DF8 476 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 MSANTD3Q96H12 275 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 BIRC8Q96P09 236 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 WRAP53Q9BUR4 548 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 SLC6A17Q9H1V8 727 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 RSPH9Q9H1X1 276 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 COPS7BQ9H9Q2 264 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 ACSS2Q9NR19 701 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 NFKBIL1Q9UBC1 381 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 SERGEFQ9UGK8 458 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 TRMT6Q9UJA5 497 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 RIMS3Q9UJD0 308 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 NUMA1Q14980 2115 aa12.94□□□□□ -0.34
SQSTM1-201ENST00000360718 PRSS51A0A1B0GVH4 220 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 AGAP14A8MT82 685 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 LOC730098B7Z3J9 87 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 SDHDO14521 159 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 AREL1O15033 823 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 GPC4O75487 556 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CLPTM1O96005 669 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CD9P21926 228 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 RPS3P23396 243 aaKnown RBP eCLIP12.93□□□□□ -0.342e-7■■□□□ 13.4
SQSTM1-201ENST00000360718 MS4A2Q01362 244 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CNTN1Q12860 1018 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 SQLEQ14534 574 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 TMEM207Q6UWW9 146 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 EGFL6Q8IUX8 553 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 SLC22A9Q8IVM8 553 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 NRSN1Q8IZ57 195 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 SPATA6LQ8N4H0 392 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 AADATQ8N5Z0 425 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 TXNDC5Q8NBS9 432 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 KCNJ9Q92806 393 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 UBXN10Q96LJ8 280 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 COPS8Q99627 209 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 GABRG3Q99928 467 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ZSCAN5AQ9BUG6 496 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 BOCQ9BWV1 1114 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 UNKQ9C0B0 810 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 MKRN2Q9H000 416 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ABCG8Q9H221 673 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 FBRSQ9HAH7 460 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ZDHHC3Q9NYG2 299 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ADA2Q9NZK5 511 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 TMPRSS11EQ9UL52 423 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 AP4B1Q9Y6B7 739 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 A0A1W2PQF6 199 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ACOT8O14734 319 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 WNT9AO14904 365 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 MID1O15344 667 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 KLF8O95600 359 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CAPNS1P04632 268 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 C5AR1P21730 350 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 P2RY2P41231 377 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 NSG1P42857 185 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms