RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 WDR75Q8IWA0 830 aaKnown RBP9.02□□□□□ -0.97
UPF2-202ENST00000357604 CAMKVQ8NCB2 501 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 OR9A1PQ8NGU1 263 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 KCNJ9Q92806 393 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 CLIP3Q96DZ5 547 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 CHMP6Q96FZ7 201 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 VIPAS39Q9H9C1 493 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 PPIL1Q9Y3C6 166 aa9.02□□□□□ -0.97
UPF2-202ENST00000357604 NPEPPSL1A6NEC2 478 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ARNTLO00327 626 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 NVLO15381 856 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 ITGA2BP08514 1039 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 CR2P20023 1033 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SEMA3AQ14563 771 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ACAP2Q15057 778 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 WSCD2Q2TBF2 565 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 LRRC70Q7Z2Q7 622 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 MILR1Q7Z6M3 343 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 FAM129CQ86XR2 697 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 CILP2Q8IUL8 1156 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PHTF2Q8N3S3 785 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ECHDC3Q96DC8 303 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 CD180Q99467 661 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 NDNQ99608 321 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SEMA4GQ9NTN9 838 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 NOVA2Q9UNW9 492 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 FIS1Q9Y3D6 152 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 NUAK1O60285 661 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PDGFBP01127 241 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 CCDC166P0CW27 439 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PRLHRP49683 370 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 LIMK2P53671 638 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 MAPK10P53779 464 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 MXRA7P84157 204 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 OCA2Q04671 838 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ACTN3Q08043 901 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 TMEM215Q68D42 235 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 CHSY3Q70JA7 882 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ACVR1CQ8NER5 493 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SGF29Q96ES7 293 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 MYEOVQ96EZ4 313 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 CMKLR1Q99788 373 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 AARSD1Q9BTE6 412 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 NFKBIL1Q9UBC1 381 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 C19orf25Q9UFG5 118 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 A0A1W2PQF6 199 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 C4orf47A7E2U8 309 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PRMT3O60678 531 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 NOVA1P51513 510 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 TP53BP2Q13625 1128 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ANKRD22Q5VYY1 191 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 OLIG1Q8TAK6 271 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SGSM3Q96HU1 749 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 TFB2MQ9H5Q4 396 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 PCDHGB4Q9UN71 923 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SNX11Q9Y5W9 270 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ANK1P16157 1881 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SLCO1B7G3V0H7 640 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 UBXN7O94888 489 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 WDR47O94967 919 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 OTCP00480 354 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 F3P13726 295 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ALOX15P16050 662 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 OAS2P29728 719 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 RPL3P39023 403 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 MAGEA6P43360 314 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 RGRP47804 291 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PPP2CBP62714 309 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PPP2CAP67775 309 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 XKR6Q5GH73 641 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SPDYAQ5MJ70 313 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SLC23A3Q6PIS1 610 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 BPHLQ86WA6 291 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 KIAA2013Q8IYS2 634 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ADAMTS18Q8TE60 1221 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 FAM136AQ96C01 138 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ZC3H10Q96K80 434 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 ZPBPQ9BS86 351 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 TEX101Q9BY14 249 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PARVBQ9HBI1 364 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 RRAGDQ9NQL2 400 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 RABGEF1Q9UJ41 708 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 FAM47E-STBD1D6RA91 191 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 S1PR4O95977 384 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ATXN1LP0C7T5 689 aaKnown RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 ZNF8P17098 575 aaPredicted RBP9.01□□□□□ -0.97
UPF2-202ENST00000357604 SSTR1P30872 391 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ARSFP54793 590 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 IRF8Q02556 426 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SLC29A2Q14542 456 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 AMIGO1Q86WK6 493 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 THAP11Q96EK4 314 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 APOPT1Q96IL0 206 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 LMLNQ96KR4 655 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 PSD3Q9NYI0 1048 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 ANKMY1Q9P2S6 941 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 LRIT1Q9P2V4 623 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 SARDHQ9UL12 918 aa9.01□□□□□ -0.97
UPF2-202ENST00000357604 IGLV3-19P01714 112 aa9□□□□□ -0.97
UPF2-202ENST00000357604 MTHFD1P11586 935 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms