RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SF3A2Q15428 464 aaKnown RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 PHKG1Q16816 387 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ZDHHC20Q5W0Z9 365 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 SUSD1Q6UWL2 747 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 TRIM69Q86WT6 500 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 OR5AR1Q8NGP9 310 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 SCG3Q8WXD2 468 aaKnown RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 PANX3Q96QZ0 392 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 HBEGFQ99075 208 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 LRFN3Q9BTN0 628 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 PHACTR1Q9C0D0 580 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 CDH19Q9H159 772 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 INTS9Q9NV88 658 aaKnown RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 ARL15Q9NXU5 204 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 TBC1D29Q9UFV1 150 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 VPS9D1Q9Y2B5 631 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 FRYQ5TBA9 3013 aa9.02□□□□□ -0.96
USP4-202ENST00000351842 PCNX2A6NKB5 2137 aa9.02□□□□□ -0.96
USP4-202ENST00000351842 NUAK1O60285 661 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 FTH1P02794 183 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 MPSTP25325 297 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 ATP5DP30049 168 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 RGS4P49798 205 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 AGTR2P50052 363 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SUOXP51687 545 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 HK3P52790 923 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 DCDC1P59894 354 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 ARHGAP8P85298 464 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 TIAL1Q01085 375 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP4-202ENST00000351842 OR4D1Q15615 310 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 FAM83EQ2M2I3 478 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 CNTN4Q8IWV2 1026 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SYTL1Q8IYJ3 562 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 TMEM145Q8NBT3 493 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 ASZ1Q8WWH4 475 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 GAB3Q8WWW8 586 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 OR2M4Q96R27 311 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 FERD3LQ96RJ6 166 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 TCF12Q99081 682 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 CCM2Q9BSQ5 444 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 STMN4Q9H169 189 aaPredicted RBP9.02□□□□□ -0.97
USP4-202ENST00000351842 CXorf56Q9H5V9 222 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 NMRAL1Q9HBL8 299 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 ANKRD6Q9Y2G4 727 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 EML5Q05BV3 1969 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SGTAO43765 313 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 ALDH4A1P30038 563 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 PIK3CGP48736 1102 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 CLCN7P51798 805 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 DPTQ07507 201 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SPEM2Q0P670 501 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 FZD2Q14332 565 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 AMZ1Q400G9 498 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SNAP47Q5SQN1 464 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 KLC3Q6P597 504 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SLC36A4Q6YBV0 504 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 UBE2R2Q712K3 238 aaPredicted RBP9.02□□□□□ -0.97
USP4-202ENST00000351842 PPP4R1Q8TF05 950 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 PEX13Q92968 403 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 TSPAN17Q96FV3 270 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 P2RY12Q9H244 342 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 RAD18Q9NS91 495 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 RXFP3Q9NSD7 469 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 KLHL20Q9Y2M5 609 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 NCOR2Q9Y618 2525 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 SCN8AQ9UQD0 1980 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 CHD8Q9HCK8 2581 aa9.02□□□□□ -0.97
USP4-202ENST00000351842 IFRD1O00458 451 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 KATNA1O75449 491 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 BGNP21810 368 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 MAP4P27816 1152 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 RABIFP47224 123 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PPP2R2AP63151 447 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 RACK1P63244 317 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 OVGP1Q12889 678 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 TTLL9Q3SXZ7 439 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 NEK5Q6P3R8 708 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 SPATS2Q86XZ4 545 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 Q8N9G6 341 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 GPR150Q8NGU9 434 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 DLG3Q92796 817 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 SH3KBP1Q96B97 665 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 TEX101Q9BY14 249 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 GAREM1Q9H706 876 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 COG4Q9H9E3 785 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 RDH14Q9HBH5 336 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PRRC2CQ9Y520 2896 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 CEP192Q8TEP8 1941 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 RP1L1Q8IWN7 2480 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 TRBV5-4A0A0C4DH59 114 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 CPED1A4D0V7 1026 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 VIMP08670 466 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 LTA4HP09960 611 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 KELP23276 732 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 TRIM23P36406 574 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 MAZP56270 477 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 YBX1P67809 324 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 DNAJC3Q13217 504 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 AGAP9Q5VTM2 703 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PMS2CLQ68D20 193 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms