RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 C2orf49Q9BVC5 232 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 DERL2Q9GZP9 239 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 BCAS3Q9H6U6 928 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 RANBP3Q9H6Z4 567 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 MYO18AQ92614 2054 aaKnown RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 SMIM35A0A1B0GVV1 85 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 KHDRBS3O75525 346 aaKnown RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 SUZ12Q15022 739 aaKnown RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CA9Q16790 459 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 RFTN2Q52LD8 501 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 DCST1Q5T197 706 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 MON1AQ86VX9 555 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 C11orf65Q8NCR3 313 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CHPT1Q8WUD6 406 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 LGALS12Q96DT0 336 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 KCTD7Q96MP8 289 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 MND1Q9BWT6 205 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 ZCCHC2Q9C0B9 1178 aaKnown RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 XPNPEP1Q9NQW7 623 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 MIOSQ9NXC5 875 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CMAHPQ9Y471 501 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 PCDHGA7Q9Y5G6 932 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 FFAR2O15552 330 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 HSD17B1P14061 328 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CRYBB1P53674 252 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 HKDC1Q2TB90 917 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 PROX2Q3B8N5 592 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 COLEC12Q5KU26 742 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 DOK6Q6PKX4 331 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 IZUMO1Q8IYV9 350 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 WDTC1Q8N5D0 677 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 PEX13Q92968 403 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 NACC2Q96BF6 587 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 C1GALT1C1Q96EU7 318 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 KCNS3Q9BQ31 491 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CDC14AQ9UNH5 594 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 SLC9A8Q9Y2E8 581 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 PRAMEF33A0A0G2JMD5 474 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 KRBA1A5PL33 1030 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 C9IYK1 514 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 DYRK3O43781 588 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 PRAMEF10O60809 474 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CPNE3O75131 537 aaKnown RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CYP7B1O75881 506 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 SNAP29O95721 258 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CHRNA1P02708 482 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 ITGB6P18564 788 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 VARSP26640 1264 aaKnown RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 YBEYP58557 167 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 LILRA4P59901 499 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 HSF2Q03933 536 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 TMEM44Q2T9K0 475 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 EML3Q32P44 896 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 TECRLQ5HYJ1 363 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 ZDHHC14Q8IZN3 488 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 CLIP4Q8N3C7 705 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 ZNF671Q8TAW3 534 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 HEPHQ9BQS7 1158 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 GLIS2Q9BZE0 524 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-203ENST00000343508 TOR3AQ9H497 397 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 HMGXB4Q9UGU5 601 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 PSAT1Q9Y617 370 aa4.72□□□□□ -1.65
CSMD3-203ENST00000343508 COL18A1P39060 1754 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 ANKDD1BA6NHY2 528 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 CCRL2O00421 344 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 COQ9O75208 318 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 SLITRK5O94991 958 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 LRATO95237 230 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 CYP2A6P11509 494 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-203ENST00000343508 RPIAP49247 311 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 SCRN3Q0VDG4 424 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 C1orf220Q5T0J3 134 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 PIK3R6Q5UE93 754 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 CARM1Q86X55 608 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 PRR11Q96HE9 360 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-203ENST00000343508 SORT1Q99523 831 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 ACAT2Q9BWD1 397 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 PDZD7Q9H5P4 517 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 FER1L6Q2WGJ9 1857 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 ARHGEF33A8MVX0 844 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 CREG1O75629 220 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 RGS20O76081 388 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 OR4F21O95013 312 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 INMTO95050 263 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 GADD45GO95257 159 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 SLC2A2P11168 524 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-203ENST00000343508 EPORP19235 508 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 ALDH4A1P30038 563 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 HNRNPFP52597 415 aaKnown RBP4.71□□□□□ -1.65
CSMD3-203ENST00000343508 MAB21L1Q13394 359 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 NAPRTQ6XQN6 538 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 LDB1Q86U70 411 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-203ENST00000343508 ZNF557Q8N988 423 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-203ENST00000343508 MFSD2AQ8NA29 543 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 ZFP42Q96MM3 310 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 PMF1-BGLAPU3KQ54 211 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 TRIP11Q15643 1979 aa4.71□□□□□ -1.65
CSMD3-203ENST00000343508 SCAMP3O14828 347 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 EEDO75530 441 aaKnown RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms