RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FEM1AQ9BSK4 669 aa22.03■■□□□ 1.12
TRIM28-202ENST00000341753 NUSAP1Q9BXS6 441 aaKnown RBP22.03■■□□□ 1.12
TRIM28-202ENST00000341753 SYTL2Q9HCH5 934 aa22.03■■□□□ 1.12
TRIM28-202ENST00000341753 NIPSNAP2O75323 286 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 HPRP00739 348 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 CAPN1P07384 714 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 RAPSNQ13702 412 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 NECAB2Q7Z6G3 386 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 OR56A4Q8NGH8 313 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 NCLNQ969V3 563 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 ADAM2Q99965 735 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 UGT2B28Q9BY64 529 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 TRPM7Q96QT4 1865 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 OR1I1O60431 355 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 B4GALT3O60512 393 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 ACVRL1P37023 503 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 GABARAPL2P60520 117 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 PTGR1Q14914 329 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 PTPRNQ16849 979 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 RFTN2Q52LD8 501 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-202ENST00000341753 CATSPEREQ5SY80 951 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 PHACTR4Q8IZ21 702 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 DPP10Q8N608 796 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 METTL6Q8TCB7 284 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 CDKN2AIPNLQ96HQ2 116 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 B3GALT6Q96L58 329 aa22.02■■□□□ 1.12
TRIM28-202ENST00000341753 LCHNA4D1U4 455 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 ODC1P11926 461 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 PIK3CGP48736 1102 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 SLC13A2Q13183 592 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 GTDC1Q4AE62 458 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 EEF1AKMT1Q8WVE0 214 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 RPL3LQ92901 407 aaKnown RBP22.01■■□□□ 1.11
TRIM28-202ENST00000341753 RBM4BQ9BQ04 359 aaKnown RBP22.01■■□□□ 1.11
TRIM28-202ENST00000341753 RBM4Q9BWF3 364 aaKnown RBP22.01■■□□□ 1.11
TRIM28-202ENST00000341753 SIAEQ9HAT2 523 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 ZNF229Q9UJW7 825 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 TMED5Q9Y3A6 229 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 A0A0U1RQS6 177 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 MLYCDO95822 493 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 HMBSP08397 361 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 PSMB9P28065 219 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 PWP1Q13610 501 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 SIM2Q14190 667 aaPredicted RBP22.01■■□□□ 1.11
TRIM28-202ENST00000341753 MSANTD2Q6P1R3 559 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 FAM171BQ6P995 826 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 BEND5Q7L4P6 421 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 SERINC5Q86VE9 423 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 IFNL1Q8IU54 200 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 UMODL1-AS1Q8N2C9 162 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 STARD8Q92502 1023 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 IGSF8Q969P0 613 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 BTN2A3PQ96KV6 586 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 NMRK2Q9NPI5 230 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 Q9Y3F1 56 aa22.01■■□□□ 1.11
TRIM28-202ENST00000341753 E2F3O00716 465 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 NDUFS3O75489 264 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 ACVR1Q04771 509 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 MGAT3Q09327 533 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 CDK5R2Q13319 367 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 AGAP7PQ5VUJ5 663 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 PLEKHG7Q6ZR37 379 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 UTS2BQ765I0 119 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 PJA1Q8NG27 643 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 GPR150Q8NGU9 434 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 HTRA1Q92743 480 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 RORBQ92753 470 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 PSD2Q9BQI7 771 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 SPC25Q9HBM1 224 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 POPDC3Q9HBV1 291 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 SCUBE2Q9NQ36 999 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 TRMT13Q9NUP7 481 aaKnown RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 SCHIP1Q9P0W5 487 aaPredicted RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 ZMYM5Q9UJ78 669 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 SPO11Q9Y5K1 396 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 GABARAPO95166 117 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 ZNF24P17028 368 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 DCTP40126 519 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 NKX2-5P52952 324 aaPredicted RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 AP5B1Q2VPB7 878 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 ZNF691Q5VV52 312 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 LAIR1Q6GTX8 287 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 LGI2Q8N0V4 545 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 OR4K2Q8NGD2 314 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 PSMA8Q8TAA3 256 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 BARD1Q99728 777 aaKnown RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 PRDM8Q9NQV8 689 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 PRMT5O14744 637 aaPredicted RBP22■■□□□ 1.11
TRIM28-202ENST00000341753 BCKDKO14874 412 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 ANGPTL1O95841 491 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 TBX18O95935 607 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 GPR15P49685 360 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 SELENBP1Q13228 472 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 MTA1Q13330 715 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 C6orf183Q5T699 404 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 RAP1GAP2Q684P5 730 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 OVOS1Q6IE37 1185 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 DET1Q7L5Y6 550 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 GPSM1Q86YR5 675 aa22■■□□□ 1.11
TRIM28-202ENST00000341753 LRRC49Q8IUZ0 686 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms