RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CMC1Q7Z7K0 106 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 CPNE9Q8IYJ1 553 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 SLC22A15Q8IZD6 547 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 NAGSQ8N159 534 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 EID2Q8N6I1 236 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 PATE1Q8WXA2 126 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 GLMNQ92990 594 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 TSPAN17Q96FV3 270 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 WWP1Q9H0M0 922 aa21.7■■□□□ 1.06
SDC3-202ENST00000339394 B4DGG1 531 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 RASGRF2O14827 1237 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 CDH16O75309 829 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 ALDOAP04075 364 aaKnown RBP21.69■■□□□ 1.06
SDC3-202ENST00000339394 SLC35G4P0C7Q5 338 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 ALPPL2P10696 532 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 CD59P13987 128 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 RAB10P61026 200 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 CAPRIN2Q6IMN6 1127 aaKnown RBP21.69■■□□□ 1.06
SDC3-202ENST00000339394 OGFOD3Q6PK18 319 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 TMEM207Q6UWW9 146 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 ZIM3Q96PE6 472 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 ROPN1BQ9BZX4 212 aaPredicted RBP21.69■■□□□ 1.06
SDC3-202ENST00000339394 ROPN1Q9HAT0 212 aaPredicted RBP21.69■■□□□ 1.06
SDC3-202ENST00000339394 POPDC3Q9HBV1 291 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 GPAMQ9HCL2 828 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 EURLQ9NYK6 297 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 SIRPGQ9P1W8 387 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 BTBD3Q9Y2F9 522 aa21.69■■□□□ 1.06
SDC3-202ENST00000339394 RALGAPA1Q6GYQ0 2036 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 TRBV23OR9-2A0A075B6M9 112 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 IQANK1A0A1B0GTG1 560 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 TLDC2A0PJX2 215 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 OR52A4PA6NMU1 304 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 TRIM49D1C9J1S8 452 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 PHGDHO43175 533 aaKnown RBP21.68■■□□□ 1.06
SDC3-202ENST00000339394 HALP42357 657 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 CASP8Q14790 479 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 RASA2Q15283 850 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 STPG1Q5TH74 334 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 EEF1AKMT1Q8WVE0 214 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 RMDN2Q96LZ7 410 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 TMEM109Q9BVC6 243 aa21.68■■□□□ 1.06
SDC3-202ENST00000339394 CFAP20Q9Y6A4 193 aaKnown RBP21.68■■□□□ 1.06
SDC3-202ENST00000339394 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 OR5K4A6NMS3 321 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 SIGLEC6O43699 453 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 WISP3O95389 354 aaPredicted RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 ZNF37AP17032 561 aaPredicted RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 ACADLP28330 430 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 TYK2P29597 1187 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 GRK6P43250 576 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 ZNF844Q08AG5 666 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 ZCCHC8Q6NZY4 707 aaKnown RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 RAPH1Q70E73 1250 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 PDZD3Q86UT5 571 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 SFRP1Q8N474 314 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 SKA2Q8WVK7 121 aaPredicted RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 MTBPQ96DY7 904 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 INSM2Q96T92 566 aaPredicted RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 SNX15Q9NRS6 342 aa21.67■■□□□ 1.06
SDC3-202ENST00000339394 TSR3Q9UJK0 312 aaKnown RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 TDRD6O60522 2096 aaKnown RBP21.67■■□□□ 1.06
SDC3-202ENST00000339394 IFRD1O00458 451 aaPredicted RBP21.66■■□□□ 1.06
SDC3-202ENST00000339394 FLRT2O43155 660 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 NOBOXO60393 691 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 TSPAN12O95859 305 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 CBSLP0DN79 551 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 ENO3P13929 434 aaPredicted RBP21.66■■□□□ 1.06
SDC3-202ENST00000339394 CRABP2P29373 138 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 ATP5DP30049 168 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 CBSP35520 551 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 CSRP3P50461 194 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 IL2P60568 153 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 KIAA2013Q8IYS2 634 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 CYP4X1Q8N118 509 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 ARL10Q8N8L6 244 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 GPR156Q8NFN8 814 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 SETD7Q8WTS6 366 aaKnown RBP21.66■■□□□ 1.06
SDC3-202ENST00000339394 ANKRD49Q8WVL7 239 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 ISL2Q96A47 359 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 C12orf66Q96MD2 445 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 SYTL2Q9HCH5 934 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 ZNF624Q9P2J8 865 aaPredicted RBP21.66■■□□□ 1.06
SDC3-202ENST00000339394 TP53BP1Q12888 1972 aaPredicted RBP21.66■■□□□ 1.06
SDC3-202ENST00000339394 PIKFYVEQ9Y2I7 2098 aa21.66■■□□□ 1.06
SDC3-202ENST00000339394 KIR2DS5A0A0G2JLQ3 304 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 A0A0G2JNG1 304 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 KIR2DS3K7RE56 304 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 EIF3FO00303 357 aaPredicted RBP21.65■■□□□ 1.06
SDC3-202ENST00000339394 SLC35E2BP0CK96 405 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 SLC2A4P14672 509 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 RGS4P49798 205 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 SERPINB8P50452 374 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 ABRQ12979 859 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 DNAJC3Q13217 504 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 KIR2DS5Q14953 304 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 RPE65Q16518 533 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 CYHR1Q6ZMK1 362 aa21.65■■□□□ 1.06
SDC3-202ENST00000339394 C17orf82Q86X59 251 aaPredicted RBP21.65■■□□□ 1.06
SDC3-202ENST00000339394 SLC35F3Q8IY50 421 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms