RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ADAM28Q9UKQ2 775 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 NDUFAF1Q9Y375 327 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TNPO3Q9Y5L0 923 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 A6NIN4 97 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC28A1O00337 649 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 QSOX1O00391 747 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 UBDO15205 165 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CD4P01730 458 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RNASE1P07998 156 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR10J4P0C629 311 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR8U9P0C7N5 309 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MYL4P12829 197 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 UQCRC2P22695 453 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CERS1P27544 350 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 NR1H2P55055 460 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 GABREP78334 506 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 GCNT1Q02742 428 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TAP2Q03519 686 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PTGDRQ13258 359 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MAB21L1Q13394 359 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 KDELC1Q6UW63 502 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 LMBR1LQ6UX01 489 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR5K2Q8NHB8 316 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 C5orf34Q96MH7 638 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RBM15Q96T37 977 aaKnown RBP eCLIP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 AGAP2Q99490 1192 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 VRK1Q99986 396 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 BRF2Q9HAW0 419 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 THUMPD1Q9NXG2 353 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC27A6Q9Y2P4 619 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR10H1Q9Y4A9 318 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CC2D2AQ9P2K1 1620 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 A0A096LPK6 155 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 AQP7O14520 342 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ALDH1A1P00352 501 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PCGF2P35227 344 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CLCN5P51795 746 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ACTBP60709 375 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ACTG1P63261 375 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC18A2Q05940 514 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MPPED2Q15777 294 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 IZUMO4Q1ZYL8 232 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RBM48Q5RL73 367 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ZFP1Q6P2D0 407 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TMPRSS9Q7Z410 1059 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TPRA1Q86W33 373 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 POU5F2Q8N7G0 328 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SUMF1Q8NBK3 374 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR2AJ1Q8NGZ0 328 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SPPL2BQ8TCT7 592 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 FCAMRQ8WWV6 532 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MSTO1Q9BUK6 570 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 LGR4Q9BXB1 951 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC6A17Q9H1V8 727 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MTG2Q9H4K7 406 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 NMNAT1Q9HAN9 279 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 HCN3Q9P1Z3 774 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 DPP7Q9UHL4 492 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 DNMT3LQ9UJW3 386 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SH2B3Q9UQQ2 575 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MED31Q9Y3C7 131 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 NEU2Q9Y3R4 380 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CLIC4Q9Y696 253 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ABCC5O15440 1437 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PRDM2Q13029 1718 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TO15178 435 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PDPK1O15530 556 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TOXO94900 526 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CD63P08962 238 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SNRPAP09012 282 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 BCKDHAP12694 445 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SSR2P43308 183 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RBP2P50120 134 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PTENP60484 403 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TLE4Q04727 773 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 XKR6Q5GH73 641 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC27A3Q5K4L6 730 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM270Q6UE05 265 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PRSS55Q6UWB4 352 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF662Q6ZS27 426 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RHOT1Q8IXI2 618 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 DEPDC4Q8N2C3 294 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TOP6BLQ8N6T0 577 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR1M1Q8NGA1 313 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ETNPPLQ8TBG4 499 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM143Q96AN5 459 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MAELQ96JY0 434 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 EPYCQ99645 322 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 DBNDD1Q9H9R9 158 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 USP29Q9HBJ7 922 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF815PA8K554 130 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PMM2O15305 246 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 HEXBP07686 556 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CMA1P23946 247 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 BMPR1AP36894 532 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 NR4A2P43354 598 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MLF1P58340 268 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 GPC5P78333 572 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TLDC1Q6P9B6 456 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 GK5Q6ZS86 529 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms