RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 DPY30Q9C005 99 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 RETREG1Q9H6L5 497 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 KIAA1522Q9P206 1035 aaPredicted RBP11.34□□□□□ -0.59
PTPN2-201ENST00000309660 CCL26Q9Y258 94 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 CROCCQ5TZA2 2017 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 PIKFYVEQ9Y2I7 2098 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.34□□□□□ -0.59
PTPN2-201ENST00000309660 LSM1O15116 133 aaKnown RBP11.34□□□□□ -0.59
PTPN2-201ENST00000309660 DFNA5O60443 496 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 GSNP06396 782 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 C8AP07357 584 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 EPB42P16452 691 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 TRAF3Q13114 568 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 ARHGEF6Q15052 776 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 PLCL1Q15111 1095 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 LCN8Q6JVE9 175 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 SLC39A5Q6ZMH5 540 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 ZNF783Q6ZMS7 281 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 ANKRD46Q86W74 232 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 NXPE1Q8N323 547 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 LIX1Q8N485 282 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 ZUFSPQ96AP4 578 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 DGCR14Q96DF8 476 aaKnown RBP11.34□□□□□ -0.59
PTPN2-201ENST00000309660 ERLEC1Q96DZ1 483 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 COPS8Q99627 209 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 SLC52A3Q9NQ40 469 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 CHD5Q8TDI0 1954 aa11.34□□□□□ -0.59
PTPN2-201ENST00000309660 GREM1O60565 184 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 LRATO95237 230 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CXCL10P02778 98 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ZFP36L2P47974 494 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 RPIAP49247 311 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 MAP7Q14244 749 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TTLL9Q3SXZ7 439 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 PDCD4Q53EL6 469 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 SPANXN4Q5MJ08 99 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CRTC1Q6UUV9 634 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ZFAND4Q86XD8 727 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TCEAL8Q8IYN2 117 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 RNF168Q8IYW5 571 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 SLC22A15Q8IZD6 547 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TRPV3Q8NET8 790 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 OR10A6Q8NH74 314 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 BIRC7Q96CA5 298 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CENPNQ96H22 339 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ADI1Q9BV57 179 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CHID1Q9BWS9 393 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 C1QTNF3Q9BXJ4 246 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 BRINP2Q9C0B6 783 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 LIN28AQ9H9Z2 209 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ARMC1Q9NVT9 282 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 DUS2Q9NX74 493 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ZIM2Q9NZV7 527 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 EIF3LQ9Y262 564 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 H6PDO95479 791 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 LDLRP01130 860 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CCL5P13501 91 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ITPKAP23677 461 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 HLA-FP30511 346 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 PPP3CCP48454 512 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 SNRPD1P62314 119 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 MAPKAPK3Q16644 382 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 AASDHQ4L235 1098 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 MPPE1Q53F39 396 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CNKSR3Q6P9H4 555 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 DPY19L3Q6ZPD9 716 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 HID1Q8IV36 788 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 OR10Q1Q8NGQ4 319 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 SCAMP4Q969E2 229 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 AURKBQ96GD4 344 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CEP295NLQ96MC4 621 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TSSK3Q96PN8 268 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CGREF1Q99674 301 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 LRRC3Q9BY71 257 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ATG10Q9H0Y0 220 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ACTL8Q9H568 366 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ZNF696Q9H7X3 374 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 MBD1Q9UIS9 605 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 CDH23Q9H251 3354 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ZFC3H1O60293 1989 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 C5orf42Q9H799 3197 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 NUP214P35658 2090 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TRAV19A0A0A6YYK7 116 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 LEFTY2O00292 366 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 RGS14O43566 566 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 AP1G1O43747 822 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 STK16O75716 305 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 BMP2P12643 396 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 SRCP12931 536 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ADARP55265 1226 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 EMX2Q04743 252 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TSTA3Q13630 321 aaPredicted RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 DDX39BQ13838 428 aaKnown RBP11.33□□□□□ -0.6
PTPN2-201ENST00000309660 PCBP2Q15366 365 aaKnown RBP eCLIP11.33□□□□□ -0.63e-6■□□□□ 9.3
PTPN2-201ENST00000309660 GTDC1Q4AE62 458 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 GRAMD4Q6IC98 578 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 PPP4R4Q6NUP7 873 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 TMEM25Q86YD3 366 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ZNF366Q8N895 744 aa11.33□□□□□ -0.6
PTPN2-201ENST00000309660 ANKFN1Q8N957 763 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms