RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 DDX6P26196 483 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP38-201ENST00000307017 UGT1A3P35503 534 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 CLCNKBP51801 687 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 MRPS5P82675 430 aaKnown RBP12.48□□□□□ -0.41
USP38-201ENST00000307017 MLLT1Q03111 559 aaPredicted RBP12.48□□□□□ -0.41
USP38-201ENST00000307017 XKRXQ6PP77 449 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 CHSY3Q70JA7 882 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 CAND1Q86VP6 1230 aaKnown RBP12.48□□□□□ -0.41
USP38-201ENST00000307017 BPIFB1Q8TDL5 484 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 GIMAP2Q9UG22 337 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 PSME2Q9UL46 239 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 E9PAM4 449 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 MAGEC1O60732 1142 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 NME6O75414 186 aaPredicted RBP12.48□□□□□ -0.41
USP38-201ENST00000307017 ELNP15502 786 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 CKMT2P17540 419 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 GRIA1P42261 906 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 PPP4CP60510 307 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 SCN1BQ07699 218 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 RPA4Q13156 261 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 ALG11Q2TAA5 492 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 FAM174BQ3ZCQ3 159 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 SH3D19Q5HYK7 790 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 SNX20Q7Z614 316 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 HEXDCQ8WVB3 486 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 CDK5RAP1Q96SZ6 601 aaKnown RBP12.48□□□□□ -0.41
USP38-201ENST00000307017 WACQ9BTA9 647 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 IFT27Q9BW83 186 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 LRRC19Q9H756 370 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 ADARB2Q9NS39 739 aaKnown RBP12.48□□□□□ -0.41
USP38-201ENST00000307017 GSKIPQ9P0R6 139 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 RAI2Q9Y5P3 530 aa12.48□□□□□ -0.41
USP38-201ENST00000307017 PLOD2O00469 737 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 C22orf31O95567 290 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 LMO2P25791 158 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 CDH5P33151 784 aaPredicted RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 CLK3P49761 638 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 HMBOX1Q6NT76 420 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ZC3H10Q96K80 434 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 CLCC1Q96S66 551 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ASAH2Q9NR71 780 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ZC3H13Q5T200 1668 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 NCANO14594 1321 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 KIF20BQ96Q89 1820 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 OTOL1A6NHN0 477 aaPredicted RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 MEIS2O14770 477 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 MTFR2Q6P444 385 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 TRIB2Q92519 343 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 FBXL20Q96IG2 436 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 RBM4BQ9BQ04 359 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 KXD1Q9BQD3 176 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 RBM4Q9BWF3 364 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 TLL2Q9Y6L7 1015 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 GLYATL1P3A0A0U1RQE8 302 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 METTL21EPA6NDL7 271 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ANXA2P2A6NMY6 339 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 EI24O14681 340 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 BPNT1O95861 308 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ANXA2P07355 339 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 ELK4P28324 431 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 OR1D2P34982 312 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 FOXM1Q08050 763 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 VTCN1Q7Z7D3 282 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ZDHHC21Q8IVQ6 265 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 BSNDQ8WZ55 320 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 SHC3Q92529 594 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 NODALQ96S42 347 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 RNF121Q9H920 327 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 SLC31A1O15431 190 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 CXCL14O95715 111 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 S100A2P29034 98 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 CLCQ05315 142 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 GPR68Q15743 365 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 USP41Q3LFD5 358 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 TMPRSS11AQ6ZMR5 421 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 PPP1R16AQ96I34 528 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 C1RP00736 705 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 GNAO1P09471 354 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 SNU13P55769 128 aaKnown RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 FAM214AQ32MH5 1076 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 GALNT10Q86SR1 603 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 CPT1BQ92523 772 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 LENG9Q96B70 501 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 DNAJC19Q96DA6 116 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 A0A088AWK7 358 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 CFHP08603 1231 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ALPIP09923 528 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 ZNF10P21506 573 aaPredicted RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 CRHR1P34998 444 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 RGS8P57771 180 aaPredicted RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 ZNF648Q5T619 568 aaPredicted RBP12.47□□□□□ -0.41
USP38-201ENST00000307017 FSTL4Q6MZW2 842 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 SLC15A3Q8IY34 581 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 TMEM168Q9H0V1 697 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 C14orf105Q9NVL8 296 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 NCOA3Q9Y6Q9 1424 aa12.47□□□□□ -0.41
USP38-201ENST00000307017 NOTOA8MTQ0 251 aa12.46□□□□□ -0.41
USP38-201ENST00000307017 TLL1O43897 1013 aa12.46□□□□□ -0.41
USP38-201ENST00000307017 TSPAN1O60635 241 aa12.46□□□□□ -0.41
USP38-201ENST00000307017 CBFA2T3O75081 653 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms