RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 RHBDF1Q96CC6 855 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 MED30Q96HR3 178 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 SDHCQ99643 169 aaPredicted RBP13.27□□□□□ -0.28
SKA3-201ENST00000298260 SH3GL1Q99961 368 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 COMMD8Q9NX08 183 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 C3orf18Q9UK00 162 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 TRHDEQ9UKU6 1024 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 AKT3Q9Y243 479 aa13.27□□□□□ -0.28
SKA3-201ENST00000298260 TMCC2O75069 709 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 PIRTP0C851 137 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 CD1DP15813 335 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 GRK3P35626 688 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 KRT20P35900 424 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 SNRPD2P62316 118 aaKnown RBP13.27□□□□□ -0.29
SKA3-201ENST00000298260 CD83Q01151 205 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 FOXM1Q08050 763 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 FOXD4Q12950 439 aaPredicted RBP13.27□□□□□ -0.29
SKA3-201ENST00000298260 LRRC26Q2I0M4 334 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 GPRIN1Q7Z2K8 1008 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 MILR1Q7Z6M3 343 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 CDYL2Q8N8U2 506 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 OR2T12Q8NG77 320 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 FAM162AQ96A26 154 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 CHCHD6Q9BRQ6 235 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 ZNF717Q9BY31 904 aaPredicted RBP13.27□□□□□ -0.29
SKA3-201ENST00000298260 CLPBQ9H078 707 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 ASB7Q9H672 318 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 RGS18Q9NS28 235 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 TOR4AQ9NXH8 423 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 GALPQ9UBC7 116 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 NUFIP1Q9UHK0 495 aaKnown RBP13.27□□□□□ -0.29
SKA3-201ENST00000298260 MAGEL2Q9UJ55 1249 aa13.27□□□□□ -0.29
SKA3-201ENST00000298260 C12orf71A8MTZ7 269 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 RGS10O43665 173 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 GJB3O75712 270 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 B3GALT4O96024 378 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 C1QCP02747 245 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 HLA-DQB2P05538 268 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CCDC159P0C7I6 412 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 G6PDP11413 515 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TKTL1P51854 596 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 DAB2P98082 770 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 GALNT1Q10472 559 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 SYVN1Q86TM6 617 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 UBQLNLQ8IYU4 475 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 PGBD5Q8N414 524 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 ZBED3Q96IU2 234 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 TKTL2Q9H0I9 626 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 DUSP21Q9H596 190 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CCDC177Q9NQR7 707 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 SMPD4Q9NXE4 827 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 PGAP2Q9UHJ9 254 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CPA4Q9UI42 421 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 FAM50BQ9Y247 325 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 WBP11Q9Y2W2 641 aaKnown RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 DNMT3AQ9Y6K1 912 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 H3BQ06 376 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 USP17L7P0C7H9 530 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 HSMCR30P0CW71 290 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 DDX5P17844 614 aaKnown RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 PTPRAP18433 802 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 AKAP5P24588 427 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 IGFBP5P24593 272 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 ZNF549Q6P9A3 640 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 NECAB2Q7Z6G3 386 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 DPP9Q86TI2 863 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CCDC71Q8IV32 467 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 SPERTQ8NA61 448 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CHAC2Q8WUX2 184 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 MRGPRX2Q96LB1 330 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TRMOQ9BU70 441 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 ULBP1Q9BZM6 244 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 SLC6A13Q9NSD5 602 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TMEM39AQ9NV64 488 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TAS2R9Q9NYW1 312 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TBC1D24Q9ULP9 559 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 NEUROG3Q9Y4Z2 214 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CDK2AP1O14519 115 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TULP3O75386 442 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 WEE1P30291 646 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 HTR6P50406 440 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 NUDT6P53370 316 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 SEMA3BQ13214 749 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CARD16Q5EG05 197 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 FAAH2Q6GMR7 532 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 SDE2Q6IQ49 451 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 ERAP2Q6P179 960 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 PDZD4Q76G19 769 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 CILP2Q8IUL8 1156 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TRIM48Q8IWZ4 208 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 BEST2Q8NFU1 509 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 REXO5Q96IC2 774 aaKnown RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 SNX18Q96RF0 628 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 TAS2R16Q9NYV7 291 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 MAT2BQ9NZL9 334 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 CRNNQ9UBG3 495 aaPredicted RBP13.26□□□□□ -0.29
SKA3-201ENST00000298260 GABRQQ9UN88 632 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 SPEF1Q9Y4P9 236 aa13.26□□□□□ -0.29
SKA3-201ENST00000298260 COL2A1P02458 1487 aaPredicted RBP13.25□□□□□ -0.29
SKA3-201ENST00000298260 IGKV6-21A0A0C4DH24 114 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms