RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 IGLON5A6NGN9 336 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 KMOO15229 486 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 TP73O15350 636 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 VIPP01282 170 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 MMP2P08253 660 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ADSLP30566 484 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 HPCAL1P37235 193 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ARHGDIAP52565 204 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 CNTN1Q12860 1018 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 NAA25Q14CX7 972 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 EGFLAMQ63HQ2 1017 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF852Q6ZMS4 543 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 GALNT7Q86SF2 657 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 RALGPS2Q86X27 583 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 CDRT15Q96T59 188 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 TBC1D10AQ9BXI6 508 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SGK2Q9HBY8 427 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 GALPQ9UBC7 116 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 TMEM98Q9Y2Y6 226 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 HTRA2O43464 458 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 AKAP10O43572 662 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ALDH9A1P49189 494 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 KRT72Q14CN4 511 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 LIPIQ6XZB0 460 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ELSPBP1Q96BH3 223 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 LRTM1Q9HBL6 345 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 LEF1Q9UJU2 399 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 WASH3PC4AMC7 463 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 PLK4O00444 970 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 PIP5K1BO14986 540 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SCAMP1O15126 338 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 VEGFDO43915 354 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ME2P23368 584 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 RPS3P23396 243 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ACTR1BP42025 376 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 BLKP51451 505 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ACTR1AP61163 376 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SATB1Q01826 763 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SP140Q13342 867 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SAMD4BQ5PRF9 694 aaKnown RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 DNAJC14Q6Y2X3 702 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 RIPOR1Q6ZS17 1223 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 LPCAT2Q7L5N7 544 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 TAF8Q7Z7C8 310 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 C2orf73Q8N5S3 287 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 NAT14Q8WUY8 206 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 JADE3Q92613 823 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 NXPE3Q969Y0 559 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF707Q96C28 371 aaPredicted RBP11.38□□□□□ -0.59
VPS4A-201ENST00000254950 EBF4Q9BQW3 602 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 BOCQ9BWV1 1114 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SLC32A1Q9H598 525 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SCML1Q9UN30 329 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 SDK1Q7Z5N4 2213 aa11.38□□□□□ -0.59
VPS4A-201ENST00000254950 TCRBV21S2A2A0A5A6 115 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 EIF2DP41214 584 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CLCNKAP51800 687 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PNLIPRP1P54315 467 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 C21orf59P57076 290 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 NCALDP61601 193 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 SLC25A3Q00325 362 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 BNIP1Q12981 228 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PARM1Q6UWI2 310 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 TFGQ92734 400 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 FAM162AQ96A26 154 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PYCR2Q96C36 320 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 MYADMQ96S97 322 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 RUBCNLQ9H714 662 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 TRIM39Q9HCM9 518 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 TRBV23OR9-2A0A075B6M9 112 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CCDC160A6NGH7 325 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 RNGTTO60942 597 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CCNDBP1O95273 360 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 COX7A2P14406 83 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 IL12RB1P42701 662 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ETV4P43268 484 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 TYSND1Q2T9J0 566 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PAGE2Q7Z2X7 111 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 HSD11B1LQ7Z5J1 315 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PLPP6Q8IY26 295 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 KDM1BQ8NB78 822 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 GPR156Q8NFN8 814 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 RCN3Q96D15 328 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 FAM120BQ96EK7 910 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ZFRQ96KR1 1074 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 HBEGFQ99075 208 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 YIPF2Q9BWQ6 316 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 NLNQ9BYT8 704 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 GSAPA4D1B5 854 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 GUCY1B2O75343 617 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PREPP48147 710 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PRIM2P49643 509 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 HYAL1Q12794 435 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 GRIN2CQ14957 1233 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 SF1Q15637 639 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CYP51A1Q16850 503 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 WASHC2DQ5SRD0 308 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 FRMD7Q6ZUT3 714 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 LRRC70Q7Z2Q7 622 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 OR10G6Q8NH81 332 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms