RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 MTX2O75431 263 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 SRPRAP08240 638 aaKnown RBP8.53□□□□□ -1.04
VPS4B-201ENST00000238497 RBP1P09455 135 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 STX1BP61266 288 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 SLC20A2Q08357 652 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 ELAVL3Q14576 367 aaKnown RBP8.53□□□□□ -1.04
VPS4B-201ENST00000238497 KRT72Q14CN4 511 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 WASHC2DQ5SRD0 308 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 C9orf64Q5T6V5 341 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 RETSATQ6NUM9 610 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 IZUMO2Q6UXV1 221 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 LRRC49Q8IUZ0 686 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 PTERQ96BW5 349 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 NSMCE3Q96MG7 304 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 TAS2R13Q9NYV9 303 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 SERGEFQ9UGK8 458 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 VPS51Q9UID3 782 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 LNPEPQ9UIQ6 1025 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 TRMT6Q9UJA5 497 aaKnown RBP8.53□□□□□ -1.04
VPS4B-201ENST00000238497 ANKRD6Q9Y2G4 727 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 TRAF6Q9Y4K3 522 aa8.53□□□□□ -1.04
VPS4B-201ENST00000238497 A0A1B0GTW7 788 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 CAPN14A8MX76 684 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 C1QTNF3-AMACRE9PGA6 284 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 MATN2O00339 956 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 HNRNPCL1O60812 293 aaKnown RBP8.52□□□□□ -1.04
VPS4B-201ENST00000238497 TM7SF2O76062 418 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 PCDH8O95206 1070 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 FGF1P05230 155 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 ATXN1LP0C7T5 689 aaKnown RBP8.52□□□□□ -1.04
VPS4B-201ENST00000238497 HLA-DPA1P20036 260 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 EEF1DP29692 281 aaKnown RBP8.52□□□□□ -1.04
VPS4B-201ENST00000238497 GGT5P36269 586 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 SLC34A1Q06495 639 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 C18orf21Q32NC0 220 aaPredicted RBP8.52□□□□□ -1.04
VPS4B-201ENST00000238497 EPGNQ6UW88 154 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 LMNTD2Q8IXW0 634 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 FBXO39Q8N4B4 442 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 CDYL2Q8N8U2 506 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 CEP70Q8NHQ1 597 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 CDC26Q8NHZ8 85 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 MRGPRX3Q96LB0 322 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 ADGRE3Q9BY15 652 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 MAGEH1Q9H213 219 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 SEMA6AQ9H2E6 1030 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 ASB8Q9H765 288 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 USP36Q9P275 1121 aaKnown RBP8.52□□□□□ -1.04
VPS4B-201ENST00000238497 ANGPTL3Q9Y5C1 460 aa8.52□□□□□ -1.04
VPS4B-201ENST00000238497 METTL12A8MUP2 240 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ANKRD66B4E2M5 251 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ARHGAP33O14559 1287 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FFAR3O14843 346 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 GPR42O15529 346 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 GRID2O43424 1007 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 CLDN7O95471 211 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 THRAP10827 490 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 LPOP22079 712 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 DPP6P42658 865 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 METAP1P53582 386 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 TRAF2Q12933 501 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FOXC1Q12948 553 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ENPP2Q13822 863 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 COL9A2Q14055 689 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FLOT2Q14254 428 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 PLA2G4EQ3MJ16 856 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FAM46CQ5VWP2 391 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ZNF549Q6P9A3 640 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 PAOXQ6QHF9 649 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 RABEPKQ7Z6M1 372 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 KYQ8NBH2 561 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 PIP4K2CQ8TBX8 421 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 EEF1AKMT1Q8WVE0 214 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 BIRC7Q96CA5 298 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 CCDC97Q96F63 343 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 SLC30A3Q99726 388 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 PCDHAC1Q9H158 963 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 SLC32A1Q9H598 525 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ZDHHC6Q9H6R6 413 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 EML4Q9HC35 981 aaKnown RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 MKS1Q9NXB0 559 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 CRLS1Q9UJA2 301 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 A0A087X1B8 175 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 A0A1W2PQ67 120 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 H3BMM5 538 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 SLC31A1O15431 190 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 SLC7A4O43246 635 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 ITGAXP20702 1163 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 VHLP40337 213 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 GDF5P43026 501 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FOXA1P55317 472 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 C21orf59P57076 290 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 SIM1P81133 766 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FOXK2Q01167 660 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 RAD51Q06609 339 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 GRIK2Q13002 908 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 FASTKQ14296 549 aaKnown RBP8.52□□□□□ -1.05
VPS4B-201ENST00000238497 TEAD4Q15561 434 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 OR4D1Q15615 310 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 DSELQ8IZU8 1212 aa8.52□□□□□ -1.05
VPS4B-201ENST00000238497 LSMEM2Q8N112 164 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms