RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LIMK2P53671 638 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MMRN1Q13201 1228 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF544Q6NX49 715 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CMTR2Q8IYT2 770 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RGL4Q8IZJ4 473 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF655Q8N720 491 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ENDOVQ8N8Q3 282 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ATG4CQ96DT6 458 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CERS2Q96G23 380 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 C1QTNF1Q9BXJ1 281 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SLCO5A1Q9H2Y9 848 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ATXN3LQ9H3M9 355 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ANTXR1Q9H6X2 564 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 YARS2Q9Y2Z4 477 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FANCMQ8IYD8 2048 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 OR6C75A6NL08 312 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 POC1B-GALNT4F8VUJ3 575 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ANXA5P08758 320 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EPHA8P29322 1005 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SEC24CP53992 1094 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CHRNB3Q05901 458 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 C2orf27AQ580R0 203 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ZMAT1Q5H9K5 638 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NDUFAF5Q5TEU4 345 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IL23RQ5VWK5 629 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NAGSQ8N159 534 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ATPAF2Q8N5M1 289 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RBBP8NLQ8NC74 664 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CHST13Q8NET6 341 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FBXL20Q96IG2 436 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SUGCTQ9HAC7 445 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SMPD3Q9NY59 655 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 USP21Q9UK80 565 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MEX3AA1L020 520 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CAPNS1P04632 268 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CPN2P22792 545 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MAP2K4P45985 399 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TRIM71Q2Q1W2 868 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 XKR6Q5GH73 641 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CPNE8Q86YQ8 564 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MMAAQ8IVH4 418 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 L3MBTL4Q8NA19 623 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TET1Q8NFU7 2136 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RAET1EQ8TD07 263 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ESR2Q92731 530 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SLC4A5Q9BY07 1137 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ANO3Q9BYT9 981 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MUC13Q9H3R2 512 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CTPS2Q9NRF8 586 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TNFRSF10DQ9UBN6 386 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RNF212BA8MTL3 300 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FKTNO75072 461 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TM7SF2O76062 418 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ITGA6P23229 1130 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 GLRA2P23416 452 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TLE4Q04727 773 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CBWD6Q4V339 395 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CBWD3Q5JTY5 395 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CBWD5Q5RIA9 395 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC107Q8WV48 283 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FOPNLQ96NB1 174 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 BRF2Q9HAW0 419 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 HCFC1R1Q9NWW0 138 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RAPGEFL1Q9UHV5 662 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PIN4Q9Y237 131 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ASB3Q9Y575 518 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FKBP7Q9Y680 259 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 YEATS2Q9ULM3 1422 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PI4KAP2A4QPH2 592 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 HELTA6NFD8 242 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PDZK1P1A8MUH7 402 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FFAR2O15552 330 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 DGAT1O75907 488 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 WDR47O94967 919 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PCDH8O95206 1070 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 LDOC1O95751 146 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SOD2P04179 222 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FBXO45P0C2W1 286 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CD1BP29016 333 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IL12BP29460 328 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NCKAP1LP55160 1127 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 HTRA3P83110 453 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 KRT33BQ14525 404 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 INPP5AQ14642 412 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 IRF4Q15306 451 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 KRT31Q15323 416 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 COL13A1Q5TAT6 717 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 DCUN1D2Q6PH85 259 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 THNSL2Q86YJ6 484 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 DHX40Q8IX18 779 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PYROXD2Q8N2H3 581 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MREGQ8N565 214 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 OR2D3Q8NGH3 330 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ROBO4Q8WZ75 1007 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 COQ8BQ96D53 544 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 GDF2Q9UK05 429 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ERGIC3Q9Y282 383 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CNTLNQ9NXG0 1405 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FAM86B1E9PN63 330 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MGRN1O60291 552 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms