RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF582Q96NG8 517 aaPredicted RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 GAD1Q99259 594 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 LAT2Q9GZY6 243 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 DENND2DQ9H6A0 471 aaPredicted RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 RRP7BPQ9NSQ0 103 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 PIAS3Q9Y6X2 628 aa3.62□□□□□ -1.83
CD44-239ENST00000639002 SOS1Q07889 1333 aaPredicted RBP3.62□□□□□ -1.83
CD44-239ENST00000639002 IGHV4-4A0A075B6R2 117 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 SLCO1B7G3V0H7 640 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 DNM1LO00429 736 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 ZNF197O14709 1029 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 SCAMP1O15126 338 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 LGALS3BPQ08380 585 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 GAGE2BQ13066 116 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 GAGE2EQ4V326 116 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 ZDHHC20Q5W0Z9 365 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 GAGE2AQ6NT46 116 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 KLC3Q6P597 504 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 NCEH1Q6PIU2 408 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 Q6ZSR9 355 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 ANKRD52Q8NB46 1076 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 TBATAQ96M53 351 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 PDCL3Q9H2J4 239 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 C9orf78Q9NZ63 289 aaPredicted RBP3.61□□□□□ -1.83
CD44-239ENST00000639002 GAGE2DQ9UEU5 116 aa3.61□□□□□ -1.83
CD44-239ENST00000639002 PRR32B1ATL7 298 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 EDN1P05305 212 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 GATA1P15976 413 aaPredicted RBP3.6□□□□□ -1.83
CD44-239ENST00000639002 GATA2P23769 480 aaPredicted RBP3.6□□□□□ -1.83
CD44-239ENST00000639002 SLC6A12P48065 614 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 SNRPD1P62314 119 aaKnown RBP3.6□□□□□ -1.83
CD44-239ENST00000639002 PPP2R2BQ00005 443 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 GOLGA8DPQ0D2H9 430 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 ZNF239Q16600 458 aaKnown RBP3.6□□□□□ -1.83
CD44-239ENST00000639002 PCGF3Q3KNV8 242 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 TCTE1Q5JU00 501 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 RARS2Q5T160 578 aaKnown RBP3.6□□□□□ -1.83
CD44-239ENST00000639002 ARHGEF16Q5VV41 709 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 ACSM2BQ68CK6 577 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 JADE1Q6IE81 842 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 METTL7BQ6UX53 244 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 DNAJC22Q8N4W6 341 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 FGFBP3Q8TAT2 258 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 HSD17B8Q92506 261 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 PKP2Q99959 881 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 OLFML3Q9NRN5 406 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 INTS9Q9NV88 658 aaKnown RBP3.6□□□□□ -1.83
CD44-239ENST00000639002 PAG1Q9NWQ8 432 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 EHD2Q9NZN4 543 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 PGAP2Q9UHJ9 254 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 SLC7A7Q9UM01 511 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 ADAMTS9Q9P2N4 1935 aa3.6□□□□□ -1.83
CD44-239ENST00000639002 AGRNO00468 2067 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 LIPT2A6NK58 231 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 RTN3O95197 1032 aaPredicted RBP3.59□□□□□ -1.83
CD44-239ENST00000639002 CSRP3P50461 194 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 LRMPQ12912 555 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 ENPP2Q13822 863 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 DCAF10Q5QP82 559 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 GKAP1Q5VSY0 366 aaPredicted RBP3.59□□□□□ -1.83
CD44-239ENST00000639002 CORO6Q6QEF8 472 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 OR2T11Q8NH01 316 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 HPSE2Q8WWQ2 592 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 DAZLQ92904 295 aaKnown RBP3.59□□□□□ -1.83
CD44-239ENST00000639002 HGH1Q9BTY7 390 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 RNF186Q9NXI6 227 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 TAB2Q9NYJ8 693 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 NPAP1Q9NZP6 1156 aa3.59□□□□□ -1.83
CD44-239ENST00000639002 PLEKHD1A6NEE1 506 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 TMEM63AO94886 807 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 H1F0P07305 194 aaKnown RBP3.58□□□□□ -1.84
CD44-239ENST00000639002 RARGP13631 454 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 ASTE1Q2TB18 679 aaPredicted RBP3.58□□□□□ -1.84
CD44-239ENST00000639002 INTS11Q5TA45 600 aaKnown RBP3.58□□□□□ -1.84
CD44-239ENST00000639002 CPLX4Q7Z7G2 160 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 DCLK2Q8N568 766 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 ZNRF4Q8WWF5 429 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 NUDCD1Q96RS6 583 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 SEC62Q99442 399 aaKnown RBP3.58□□□□□ -1.84
CD44-239ENST00000639002 FGFBP2Q9BYJ0 223 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 ACKR4Q9NPB9 350 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 TMEM98Q9Y2Y6 226 aa3.58□□□□□ -1.84
CD44-239ENST00000639002 A0A1W2PR77 199 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 A8MZ25 164 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 ATP6V0E1O15342 81 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 GPC4O75487 556 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 KHDRBS3O75525 346 aaKnown RBP3.57□□□□□ -1.84
CD44-239ENST00000639002 OR2C1O95371 312 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 DUS4LO95620 317 aaKnown RBP3.57□□□□□ -1.84
CD44-239ENST00000639002 NFKBIAP25963 317 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 NMBRP28336 390 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 PSMC4P43686 418 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 B3GALT5-AS1P59052 145 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 PNRC1Q12796 327 aaPredicted RBP3.57□□□□□ -1.84
CD44-239ENST00000639002 GPR17Q13304 367 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 GCNT6Q5T4J0 391 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 KIAA0930Q6ICG6 404 aaPredicted RBP3.57□□□□□ -1.84
CD44-239ENST00000639002 PSRC1Q6PGN9 363 aaPredicted RBP3.57□□□□□ -1.84
CD44-239ENST00000639002 TMTC3Q6ZXV5 915 aa3.57□□□□□ -1.84
CD44-239ENST00000639002 SH2D6Q7Z4S9 175 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms