RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 RXRGP48443 463 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC11A2P49281 568 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ALDH3A2P51648 485 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CLCNKBP51801 687 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 OXCT1P55809 520 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TRAF2Q12933 501 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KRR1Q13601 381 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 NR6A1Q15406 480 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TRIP4Q15650 581 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CLPPQ16740 277 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 PPP1R3AQ16821 1122 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC36A3Q495N2 470 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FUT11Q495W5 492 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC92Q53HC0 331 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 C6orf10Q5SRN2 563 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF549Q6P9A3 640 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KRT77Q7Z794 578 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 STK32CQ86UX6 486 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 LILRB2Q8N423 598 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TMCO5AQ8N6Q1 288 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 HMGCLL1Q8TB92 370 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 DNAJB14Q8TBM8 379 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ADAMTS16Q8TE57 1224 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FBXO32Q969P5 355 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 AURKBQ96GD4 344 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SEMA3CQ99985 751 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GPATCH1Q9BRR8 931 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC39A3Q9BRY0 314 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SEMA4BQ9NPR2 832 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 OLAHQ9NV23 265 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SMOXQ9NWM0 555 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 DNAJB9Q9UBS3 223 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RAPGEFL1Q9UHV5 662 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ST3GAL5Q9UNP4 418 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 PKP3Q9Y446 797 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHB3Q9Y5E6 796 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MKI67P46013 3256 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 NME4O00746 187 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PTGESO14684 152 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CDK14O94921 469 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PKMP14618 531 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF37AP17032 561 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NELFEP18615 380 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 JAK1P23458 1154 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CCT8P50990 548 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 STC1P52823 247 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CDH13P55290 713 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 DSC2Q02487 901 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 EFEMP1Q12805 493 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TCF15Q12870 199 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NR1D2Q14995 579 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 DGUOKQ16854 277 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SMU1Q2TAY7 513 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TTLL9Q3SXZ7 439 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TIGD2Q4W5G0 525 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SIRPB2Q5JXA9 342 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 C10orf120Q5SQS8 335 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GLYATQ6IB77 296 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FAM171BQ6P995 826 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KLHL35Q6PF15 583 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 LRRC8DQ7L1W4 858 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 BHLHA9Q7RTU4 235 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GPRIN1Q7Z2K8 1008 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GLT6D1Q7Z4J2 308 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TFAP2DQ7Z6R9 452 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ADCK1Q86TW2 530 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ISCA2Q86U28 154 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PTRH1Q86Y79 214 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HIPK1Q86Z02 1210 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ADGRG5Q8IZF4 528 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 METTL6Q8TCB7 284 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HDAC2Q92769 488 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HMCESQ96FZ2 354 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 VMP1Q96GC9 406 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MAGEB10Q96LZ2 347 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZFP42Q96MM3 310 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SEPHS2Q99611 448 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SLC29A1Q99808 456 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CHID1Q9BWS9 393 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ANKHQ9HCJ1 492 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ABI2Q9NYB9 513 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 IFT80Q9P2H3 777 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HSFX1Q9UBD0 423 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 UBA2Q9UBT2 640 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PSME2Q9UL46 239 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TMCC3Q9ULS5 477 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SCML2Q9UQR0 700 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 BTRCQ9Y297 605 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 B3GNT3Q9Y2A9 372 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHB9Q9Y5E1 797 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHB1Q9Y5F3 818 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HS3ST4Q9Y661 456 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ARL5CA6NH57 179 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 JUNP05412 331 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GLULP15104 373 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 BTF3P20290 206 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CHRM3P20309 590 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 LPOP22079 712 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CDH3P22223 829 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 VARSP26640 1264 aaKnown RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms