RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ITGB6P18564 788 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 CD53P19397 219 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 DDX6P26196 483 aaKnown RBP eCLIP11.36□□□□□ -0.592e-8■■□□□ 11.6
CLN6-217ENST00000636964 NRIP1P48552 1158 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 ECT2LQ008S8 904 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 STK11Q15831 433 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 GEN1Q17RS7 908 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 TCEAL5Q5H9L2 206 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 CTSL3PQ5NE16 218 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 DHRS4L2Q6PKH6 230 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 RFLNAQ6ZTI6 216 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 FRMD7Q6ZUT3 714 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 DGLUCYQ7Z3D6 616 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 ADIPOR2Q86V24 386 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 PIP4K2CQ8TBX8 421 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 VOPP1Q96AW1 172 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 BOCQ9BWV1 1114 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 SLC25A13Q9UJS0 675 aa11.36□□□□□ -0.59
CLN6-217ENST00000636964 YBX2Q9Y2T7 364 aaKnown RBP11.36□□□□□ -0.59
CLN6-217ENST00000636964 LOC100653049A0A140TA62 436 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 NCF1BA6NI72 391 aaPredicted RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 NCF1CA8MVU1 366 aaPredicted RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 DCXO43602 365 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 KRT34O76011 436 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PRAMEF1O95521 474 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 FGF19O95750 216 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PAHP00439 452 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 HNRNPA1P09651 372 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLN6-217ENST00000636964 NCF1P14598 390 aaPredicted RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 PKMP14618 531 aaKnown RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 PFKLP17858 780 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 TTPAP49638 278 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PRKAA2P54646 552 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PRKAA1Q13131 559 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 TUBA3CQ13748 450 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PFKFB4Q16877 469 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 POM121L1PQ3SYA9 428 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 SEL1L3Q68CR1 1132 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 NXNQ6DKJ4 435 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 FAM9CQ8IZT9 166 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PHTF2Q8N3S3 785 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 CLDN19Q8N6F1 224 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 ASB8Q9H765 288 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PARVBQ9HBI1 364 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 WDR70Q9NW82 654 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 RNF11Q9Y3C5 154 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 CDC7O00311 574 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 KCTD21Q4G0X4 260 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PPP2R2DQ66LE6 453 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PATL1Q86TB9 770 aaKnown RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 DEFB107AQ8IZN7 70 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 RSPRY1Q96DX4 576 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 MARK4Q96L34 752 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 CIPCQ9C0C6 399 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 IGFLR1Q9H665 355 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 IL26Q9NPH9 171 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 RIMS3Q9UJD0 308 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 HS3ST2Q9Y278 367 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 HELZP42694 1942 aaKnown RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 E5RI56 91 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PPP6CO00743 305 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 HDAC3O15379 428 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 RB1P06400 928 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 BPIP17213 487 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 NELFEP18615 380 aaKnown RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 HOXA9P31269 272 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 TMED10P49755 219 aaKnown RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 E2F2Q14209 437 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 TSNQ15631 228 aaKnown RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 TMEM198Q66K66 360 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 SERPINA9Q86WD7 417 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PQLC1Q8N2U9 271 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 PTGR2Q8N8N7 351 aaPredicted RBP11.35□□□□□ -0.59
CLN6-217ENST00000636964 GIPC3Q8TF64 312 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 EEF1AKMT1Q8WVE0 214 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 SUV39H2Q9H5I1 410 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 ARMC7Q9H6L4 198 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 TCF7L2Q9NQB0 619 aa11.35□□□□□ -0.59
CLN6-217ENST00000636964 GAPDHSO14556 408 aaPredicted RBP11.34□□□□□ -0.59
CLN6-217ENST00000636964 KATNA1O75449 491 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 TNFAIP8O95379 198 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 SUOXP51687 545 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 CACNG1Q06432 222 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 MESP2Q0VG99 397 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 LSM12Q3MHD2 195 aaKnown RBP11.34□□□□□ -0.59
CLN6-217ENST00000636964 CARD16Q5EG05 197 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 CRTC1Q6UUV9 634 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 PIWIL4Q7Z3Z4 852 aaKnown RBP11.34□□□□□ -0.59
CLN6-217ENST00000636964 ERI1Q8IV48 349 aaKnown RBP11.34□□□□□ -0.59
CLN6-217ENST00000636964 SCAIQ8N9R8 606 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 KDM1BQ8NB78 822 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 ERLEC1Q96DZ1 483 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 TBC1D14Q9P2M4 693 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 ATPIF1Q9UII2 106 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 NPEPPSL1A6NEC2 478 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 FBP2O00757 339 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 FUCA1P04066 466 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 PSMA3P25788 255 aa11.34□□□□□ -0.59
CLN6-217ENST00000636964 MSX2P35548 267 aaPredicted RBP11.34□□□□□ -0.59
CLN6-217ENST00000636964 DNAJB13P59910 316 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms