RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 POLR1BQ9H9Y6 1135 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 EPB41L5Q9HCM4 733 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 DKK4Q9UBT3 224 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 HEBP2Q9Y5Z4 205 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 COLEC10Q9Y6Z7 277 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 IFRD1O00458 451 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 SEC31AO94979 1220 aaKnown RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 MAPK9P45984 424 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 LSSP48449 732 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 ITGA8P53708 1063 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 CYP4F3Q08477 520 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 THOC5Q13769 683 aaKnown RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 PHF19Q5T6S3 580 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 HIBCHQ6NVY1 386 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 WDR74Q6RFH5 385 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 ZNF572Q7Z3I7 529 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 ZFPM2Q8WW38 1151 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 FCRL3Q96P31 734 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 INSM2Q96T92 566 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 TBC1D10AQ9BXI6 508 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 AKAP7Q9P0M2 348 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 VPS9D1Q9Y2B5 631 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 GOLGA8KD6RF30 607 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 GOLGA8TH3BQL2 631 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 TTC4O95801 387 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 AMD1P17707 334 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 PGAM1P18669 254 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 CD151P48509 253 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 GPR18Q14330 331 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 KRT33BQ14525 404 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 LONRF1Q17RB8 773 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 ZNF658BQ4V348 819 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 C3orf38Q5JPI3 329 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 PTRHD1Q6GMV3 140 aaKnown RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 CAPRIN2Q6IMN6 1127 aaKnown RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 TMEM71Q6P5X7 295 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 SLITRK4Q8IW52 837 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 LILRA3Q8N6C8 439 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 KDF1Q8NAX2 398 aaPredicted RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 CALML6Q8TD86 181 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 NCSTNQ92542 709 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 TMEM159Q96B96 161 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 ERP44Q9BS26 406 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 CARD6Q9BX69 1037 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 GNPTGQ9UJJ9 305 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 SATB2Q9UPW6 733 aa20.25■□□□□ 0.83
CLN3-240ENST00000631023 CFAP20Q9Y6A4 193 aaKnown RBP20.25■□□□□ 0.83
CLN3-240ENST00000631023 UBXN7O94888 489 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 MPOP05164 745 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 OGNP20774 298 aaKnown RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 NDUFS1P28331 727 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 LIMK2P53671 638 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 ARL4CP56559 192 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 GABREP78334 506 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 DHX9Q08211 1270 aaKnown RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 CALCOCO2Q13137 446 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 TRA2AQ13595 282 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-240ENST00000631023 HIF1AQ16665 826 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 WHAMMP3Q1A5X7 153 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 TYSND1Q2T9J0 566 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 BBS9Q3SYG4 887 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 SYTL3Q4VX76 610 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 XKR5Q6UX68 686 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 TMPRSS9Q7Z410 1059 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 PLXDC1Q8IUK5 500 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 LMNTD2Q8IXW0 634 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 AGGF1Q8N302 714 aaeCLIP20.24■□□□□ 0.83
CLN3-240ENST00000631023 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-240ENST00000631023 SPDYE1Q8NFV5 336 aaPredicted RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 GABPB2Q8TAK5 448 aaPredicted RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 MDM1Q8TC05 714 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 ZCCHC14Q8WYQ9 949 aaKnown RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 RMDN2Q96LZ7 410 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 PANX3Q96QZ0 392 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 CMKLR1Q99788 373 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 EBNA1BP2Q99848 306 aaKnown RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 TRIM56Q9BRZ2 755 aaKnown RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 OR52A5Q9H2C5 316 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 SEMA6CQ9H3T2 930 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 C20orf96Q9NUD7 363 aaPredicted RBP20.24■□□□□ 0.83
CLN3-240ENST00000631023 SNX24Q9Y343 169 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 PCDHGA8Q9Y5G5 932 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 FAM169AQ9Y6X4 670 aa20.24■□□□□ 0.83
CLN3-240ENST00000631023 IGHV5-10-1A0A0J9YXX1 117 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 ZCWPW2A0A1B0GU75 182 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 UBA6A0AVT1 1052 aaPredicted RBP20.23■□□□□ 0.83
CLN3-240ENST00000631023 RAD51CO43502 376 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 HOXB3P14651 431 aaPredicted RBP20.23■□□□□ 0.83
CLN3-240ENST00000631023 RPS3P23396 243 aaKnown RBP eCLIP20.23■□□□□ 0.834e-6■■□□□ 12.9
CLN3-240ENST00000631023 RPL21P46778 160 aaKnown RBP20.23■□□□□ 0.83
CLN3-240ENST00000631023 PREPP48147 710 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 TUBB2AQ13885 445 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 BOP1Q14137 746 aaKnown RBP20.23■□□□□ 0.83
CLN3-240ENST00000631023 KLHL35Q6PF15 583 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 ZNF574Q6ZN55 896 aaPredicted RBP20.23■□□□□ 0.83
CLN3-240ENST00000631023 RAB11FIP2Q7L804 512 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 CILP2Q8IUL8 1156 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 FBXO39Q8N4B4 442 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 LRRC39Q96DD0 335 aa20.23■□□□□ 0.83
CLN3-240ENST00000631023 TUBB2BQ9BVA1 445 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms