RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ARL13AQ5H913 290 aaPredicted RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 NEK10Q6ZWH5 1172 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 TRAPPC5Q8IUR0 188 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 RFWD2Q8NHY2 731 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 ASB11Q8WXH4 323 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 FOXJ1Q92949 421 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 ASB2Q96Q27 587 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 ERVK-6Q9BXR3 956 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 GSTO2Q9H4Y5 243 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 NPHS2Q9NP85 383 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 KLHL14Q9P2G3 628 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 HAO1Q9UJM8 370 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 CYP8B1Q9UNU6 501 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 OARD1Q9Y530 152 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 POM121BA6NF01 834 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 LRRC14BA6NHZ5 514 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 GFYI3L273 518 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 MYCLP1P12525 358 aaPredicted RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 GTF2H3Q13889 308 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 DOK6Q6PKX4 331 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 RPS27LQ71UM5 84 aaKnown RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 CRLF3Q8IUI8 442 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 GJD3Q8N144 294 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 FBXO39Q8N4B4 442 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 SPEM1Q8N4L4 309 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 CCNYL1Q8N7R7 359 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 FRMD1Q8N878 549 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 DENND6BQ8NEG7 585 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 C10orf82Q8WW14 230 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 GLMNQ92990 594 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 C1QTNF3Q9BXJ4 246 aa13.99□□□□□ -0.17
USP39-220ENST00000613444 FAM126AQ9BYI3 521 aaPredicted RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 C6orf106Q9H6K1 298 aaPredicted RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 UTP6Q9NYH9 597 aaKnown RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 WSB2Q9NYS7 404 aaPredicted RBP13.99□□□□□ -0.17
USP39-220ENST00000613444 C17orf113A0A1B0GUU1 675 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 NCF1BA6NI72 391 aaPredicted RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 NCF1CA8MVU1 366 aaPredicted RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 STX16-NPEPL1H3BU86 382 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 STX16O14662 325 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 POP7O75817 140 aaKnown RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 MATN4O95460 622 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 IGHV4-34P06331 123 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 GFAPP14136 432 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 NCF1P14598 390 aaPredicted RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 SERPINB5P36952 375 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 RPS9P46781 194 aaKnown RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 PREPP48147 710 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 CRTC3Q6UUV7 619 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 FRMD7Q6ZUT3 714 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 ZNF781Q8N8C0 355 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 PDPRQ8NCN5 879 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 TOE1Q96GM8 510 aaKnown RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 CNDP1Q96KN2 507 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 MYOCQ99972 504 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 APOOQ9BUR5 198 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 RDH14Q9HBH5 336 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 PHPT1Q9NRX4 125 aaPredicted RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 PNPOQ9NVS9 261 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 NUDT4Q9NZJ9 180 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 SLC17A4Q9Y2C5 497 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 DNAJC16Q9Y2G8 782 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 PRKAB1Q9Y478 270 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 ASB1Q9Y576 335 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 LRP4O75096 1905 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 GPR89AB7ZAQ6 455 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 FFAR2O15552 330 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 CEACAM5P06731 702 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 GSTM1P09488 218 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 GPR89BP0CG08 455 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 PDHA2P29803 388 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 PBLDP30039 288 aaPredicted RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 AGTR2P50052 363 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 ALDH18A1P54886 795 aaKnown RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 CLDN2P57739 230 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 GSTM4Q03013 218 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 MTAPQ13126 283 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 SETDB1Q15047 1291 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 FBXO48Q5FWF7 155 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 SLC22A15Q8IZD6 547 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 CACNA2D3Q8IZS8 1091 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 OXR1Q8N573 874 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 CCDC197Q8NCU1 140 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 OR2L2Q8NH16 312 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 PIWIL2Q8TC59 973 aaKnown RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 BMFQ96LC9 184 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 SLC12A9Q9BXP2 914 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 TRIM55Q9BYV6 548 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 COG4Q9H9E3 785 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 FAM8A1Q9UBU6 413 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 MARCOQ9UEW3 520 aaPredicted RBP13.98□□□□□ -0.17
USP39-220ENST00000613444 SLC23A2Q9UGH3 650 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 TMCO1Q9UM00 188 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 CA5BQ9Y2D0 317 aa13.98□□□□□ -0.17
USP39-220ENST00000613444 NCOR1O75376 2440 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 CACNA1IQ9P0X4 2223 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 CEP192Q8TEP8 1941 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 USP34Q70CQ2 3546 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 IGHV1OR15-9A0A0B4J2B8 117 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 MGAT4DA6NG13 374 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms