RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 VPS37BQ9H9H4 285 aa14.88□□□□□ -0.03
LIG1-219ENST00000600055 UCK1Q9HA47 277 aa14.88□□□□□ -0.03
LIG1-219ENST00000600055 OGFRQ9NZT2 677 aa14.88□□□□□ -0.03
LIG1-219ENST00000600055 CDC23Q9UJX2 597 aa14.88□□□□□ -0.03
LIG1-219ENST00000600055 IGHV5-10-1A0A0J9YXX1 117 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 LILRA5A6NI73 299 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 TAF4O00268 1085 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 PRMT5O14744 637 aaPredicted RBP14.87□□□□□ -0.03
LIG1-219ENST00000600055 BRINP1O60477 761 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 NDUFS3O75489 264 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 USP1O94782 785 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 FTH1P02794 183 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 SLC35G4P0C7Q5 338 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 TYRP1P17643 537 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 PAMP19021 973 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 CCKBRP32239 447 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 TTPAP49638 278 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 EPHA4P54764 986 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 SQSTM1Q13501 440 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 ZNF789Q5FWF6 425 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 MRNIPQ6NTE8 343 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 NEPROQ6NW34 567 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 ZNF572Q7Z3I7 529 aaPredicted RBP14.87□□□□□ -0.03
LIG1-219ENST00000600055 UNC5BQ8IZJ1 945 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 RCBTB1Q8NDN9 531 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 ZCCHC14Q8WYQ9 949 aaKnown RBP14.87□□□□□ -0.03
LIG1-219ENST00000600055 ELMO1Q92556 727 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 CCDC74BQ96LY2 380 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 ZMYND15Q9H091 742 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 P2RY12Q9H244 342 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 DPH5Q9H2P9 285 aa14.87□□□□□ -0.03
LIG1-219ENST00000600055 CCDC187A0A096LP49 1063 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 UBA6A0AVT1 1052 aaPredicted RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 SLC5A10A0PJK1 596 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 FAM187AA6NFU0 413 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 QSOX1O00391 747 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 DUX1O43812 170 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 UBXN7O94888 489 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 HGFP14210 728 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 CCR7P32248 378 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 LIMK2P53671 638 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 CSE1LP55060 971 aaKnown RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 EIF3BP55884 814 aaKnown RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 BOP1Q14137 746 aaKnown RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 C16orf72Q14CZ0 275 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 TYSND1Q2T9J0 566 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 DNAJC21Q5F1R6 531 aaKnown RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 SNAP47Q5SQN1 464 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 CENPUQ71F23 418 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 SDCCAG8Q86SQ7 713 aaPredicted RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 KDF1Q8NAX2 398 aaPredicted RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 PHC3Q8NDX5 983 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 OR4D9Q8NGE8 314 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 GRAMD1AQ96CP6 724 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 LIN37Q96GY3 246 aaPredicted RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 PRR11Q96HE9 360 aaPredicted RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 EBNA1BP2Q99848 306 aaKnown RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 WDR83Q9BRX9 315 aaKnown RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 ERP44Q9BS26 406 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 STRADBQ9C0K7 418 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 POLR1BQ9H9Y6 1135 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 C20orf96Q9NUD7 363 aaPredicted RBP14.86□□□□□ -0.03
LIG1-219ENST00000600055 FAM169AQ9Y6X4 670 aa14.86□□□□□ -0.03
LIG1-219ENST00000600055 TMX2-CTNND1H3BSU7 103 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 LIN7AO14910 233 aaPredicted RBP14.85□□□□□ -0.03
LIG1-219ENST00000600055 TUBB4AP04350 444 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 GSTM1P09488 218 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 AMD1P17707 334 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 PGAM1P18669 254 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 RPS3P23396 243 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIG1-219ENST00000600055 FMO4P31512 558 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 ELK3P41970 407 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 LSSP48449 732 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 GFERP55789 205 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 GSTM4Q03013 218 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 RPA4Q13156 261 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 CTBP1Q13363 440 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 THOC5Q13769 683 aaKnown RBP14.85□□□□□ -0.03
LIG1-219ENST00000600055 CRYMQ14894 314 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 CLPPQ16740 277 aaPredicted RBP14.85□□□□□ -0.03
LIG1-219ENST00000600055 ST3GAL2Q16842 350 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 LONRF1Q17RB8 773 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 CTSL3PQ5NE16 218 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 PTRHD1Q6GMV3 140 aaKnown RBP14.85□□□□□ -0.03
LIG1-219ENST00000600055 TMEM71Q6P5X7 295 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 RAB11FIP2Q7L804 512 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 MAATS1Q7Z4T9 603 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 CILP2Q8IUL8 1156 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 DENND6AQ8IWF6 608 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 RBM12BQ8IXT5 1001 aaKnown RBP14.85□□□□□ -0.03
LIG1-219ENST00000600055 FBXO39Q8N4B4 442 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIG1-219ENST00000600055 WDR36Q8NI36 951 aaKnown RBP14.85□□□□□ -0.03
LIG1-219ENST00000600055 LPGAT1Q92604 370 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 RSC1A1Q92681 617 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 FERD3LQ96RJ6 166 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 NRTNQ99748 197 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 CARD6Q9BX69 1037 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 PLAC1Q9HBJ0 212 aa14.85□□□□□ -0.03
LIG1-219ENST00000600055 KLHL3Q9UH77 587 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms