RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 VAC14Q08AM6 782 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 PRKAA1Q13131 559 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 RPA4Q13156 261 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 SYTL3Q4VX76 610 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 TSTD2Q5T7W7 516 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 IRGCQ6NXR0 463 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 OR4L1Q8NH43 312 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 GRK7Q8WTQ7 553 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 ART4Q93070 314 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 HDAC10Q969S8 669 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 DDA1Q9BW61 102 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 IL22Q9GZX6 179 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 WDR37Q9Y2I8 494 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 TCAF1Q9Y4C2 921 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 PCDHGA3Q9Y5H0 932 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 ATMQ13315 3056 aa13.84□□□□□ -0.19
LIG1-218ENST00000599322 TRBV5-4A0A0C4DH59 114 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 CCDC162PA2VCL2 907 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 PMS2P1A4D2B8 440 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 PRR19A6NJB7 356 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 POLR1CO15160 346 aaPredicted RBP13.83□□□□□ -0.2
LIG1-218ENST00000599322 KALRNO60229 2985 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 C1QL1O75973 258 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 ZSCAN5DPP0CG00 497 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 FGF3P11487 239 aaPredicted RBP13.83□□□□□ -0.2
LIG1-218ENST00000599322 ETV5P41161 510 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 CAPZBP47756 277 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 CFHR1Q03591 330 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 SIX1Q15475 284 aaPredicted RBP13.83□□□□□ -0.2
LIG1-218ENST00000599322 CACHD1Q5VU97 1274 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 FAM83HQ6ZRV2 1179 aaPredicted RBP13.83□□□□□ -0.2
LIG1-218ENST00000599322 ARHGAP22Q7Z5H3 698 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 OOSP2Q86WS3 158 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 OTUD6BQ8N6M0 293 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 GSDMBQ8TAX9 411 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 C9orf72Q96LT7 481 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 FERD3LQ96RJ6 166 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 TRMT1Q9NXH9 659 aaKnown RBP13.83□□□□□ -0.2
LIG1-218ENST00000599322 TMEM9Q9P0T7 183 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 EPHA6Q9UF33 1036 aa13.83□□□□□ -0.2
LIG1-218ENST00000599322 MN1Q10571 1320 aaPredicted RBP13.83□□□□□ -0.2
LIG1-218ENST00000599322 SCN8AQ9UQD0 1980 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 IGLV3-16A0A075B6K0 115 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 UBA6A0AVT1 1052 aaPredicted RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 LIN7AO14910 233 aaPredicted RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 GOT2P00505 430 aaKnown RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 KRT14P02533 472 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 ANKRD34CP0C6C1 535 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 PAMP19021 973 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 CD151P48509 253 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 MC2RQ01718 297 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 FOXM1Q08050 763 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 GPS1Q13098 491 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 CLN3Q13286 438 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 DBN1Q16643 649 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 ARHGAP40Q5TG30 622 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 SDCCAG8Q86SQ7 713 aaPredicted RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 PRUNE1Q86TP1 453 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 HOOK3Q86VS8 718 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 SLC35F6Q8N357 371 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 IL22RA1Q8N6P7 574 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 PRELID2Q8N945 189 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 UBXN4Q92575 508 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 INSM2Q96T92 566 aaPredicted RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 CD180Q99467 661 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 RAB33BQ9H082 229 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 TRIT1Q9H3H1 467 aaKnown RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 COG4Q9H9E3 785 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 FBXO8Q9NRD0 319 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 HRASLS2Q9NWW9 162 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 OCIAD1Q9NX40 245 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 SAMD15Q9P1V8 674 aa13.82□□□□□ -0.2
LIG1-218ENST00000599322 TTC7AQ9ULT0 858 aaPredicted RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 CFAP20Q9Y6A4 193 aaKnown RBP13.82□□□□□ -0.2
LIG1-218ENST00000599322 C9orf172C9J069 976 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 MATN2O00339 956 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 CES2O00748 559 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 ATXN7O15265 892 aaPredicted RBP13.81□□□□□ -0.2
LIG1-218ENST00000599322 C9P02748 559 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 TCP1P17987 556 aaKnown RBP13.81□□□□□ -0.2
LIG1-218ENST00000599322 TPSB2P20231 275 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 PSMA3P25788 255 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 CA5AP35218 305 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 GRIA1P42261 906 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 TTPAP49638 278 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 VPS41P49754 854 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 SEPHS1P49903 392 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 CDKN1CP49918 316 aaPredicted RBP13.81□□□□□ -0.2
LIG1-218ENST00000599322 RHDQ02161 417 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 TRIP13Q15645 432 aaPredicted RBP13.81□□□□□ -0.2
LIG1-218ENST00000599322 TPSAB1Q15661 275 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 DNTTIP2Q5QJE6 756 aaKnown RBP13.81□□□□□ -0.2
LIG1-218ENST00000599322 TMTC4Q5T4D3 741 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 ARMC3Q5W041 872 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 CASC4Q6P4E1 433 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 LRRC8BQ6P9F7 803 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 CCDC137Q6PK04 289 aaKnown RBP13.81□□□□□ -0.2
LIG1-218ENST00000599322 PACS1Q6VY07 963 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 FAM92BQ6ZTR7 304 aa13.81□□□□□ -0.2
LIG1-218ENST00000599322 ZFAND4Q86XD8 727 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms