RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CTNNA2P26232 953 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 CHRNA4P43681 627 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 UQCRFS1P47985 274 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 VAV2P52735 878 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 WNT3AP56704 352 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 TUBB4BP68371 445 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 TUBB2AQ13885 445 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 KCNAB1Q14722 419 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 DNTTIP2Q5QJE6 756 aaKnown RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 IZUMO3Q5VZ72 239 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 METRNLQ641Q3 311 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 FAM199XQ6PEV8 388 aaPredicted RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 CCDC50Q8IVM0 306 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 TTC30BQ8N4P2 665 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 DDHD1Q8NEL9 900 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 GPR150Q8NGU9 434 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 SSC4DQ8WTU2 575 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 RBM41Q96IZ5 413 aaKnown RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 MRGPRX2Q96LB1 330 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 LRFN5Q96NI6 719 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 RUFY1Q96T51 708 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 TUBB2BQ9BVA1 445 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 ING2Q9H160 280 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 LUC7LQ9NQ29 371 aaKnown RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 LATS2Q9NRM7 1088 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 KCND1Q9NSA2 647 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 HACD3Q9P035 362 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 FAM153AQ9UHL3 310 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 ZNF451Q9Y4E5 1061 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 UTP20O75691 2785 aaKnown RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 SPENQ96T58 3664 aaKnown RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 KLHL33A6NCF5 533 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 APOC4-APOC2K7ER74 178 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 SCRG1O75711 98 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 CEACAM4O75871 244 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 SORBS2O94875 1100 aaKnown RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 ZBTB11O95625 1053 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 APOC2P02655 101 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 KLK3P07288 261 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 PYGMP11217 842 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 MTHFD1P11586 935 aaKnown RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 VARSP26640 1264 aaKnown RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 RBL1P28749 1068 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 SPAM1P38567 509 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 CCL11P51671 97 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 CTSCP53634 463 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 COPS2P61201 443 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 RPS18P62269 152 aaKnown RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 ITGA9Q13797 1035 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 PLCL1Q15111 1095 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 CHRNA6Q15825 494 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 NADK2Q4G0N4 442 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 TMTC4Q5T4D3 741 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 TMEM220Q6QAJ8 160 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 PID1Q7Z2X4 250 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 OOSP2Q86WS3 158 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 HPS6Q86YV9 775 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 BEND7Q8N7W2 519 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 ACTL9Q8TC94 416 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 MR1Q95460 341 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 FCRL5Q96RD9 977 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 BAG1Q99933 345 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 FAM118BQ9BPY3 351 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 ANP32EQ9BTT0 268 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 SMOXQ9NWM0 555 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 HRASLS2Q9NWW9 162 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 IL17CQ9P0M4 197 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 KLHL8Q9P2G9 620 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 PSMD13Q9UNM6 376 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 EFR3BQ9Y2G0 817 aa12.21□□□□□ -0.45
TRIM28-212ENST00000597995 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.21□□□□□ -0.45
TRIM28-212ENST00000597995 TNRC6AQ8NDV7 1962 aaKnown RBP12.21□□□□□ -0.46
TRIM28-212ENST00000597995 MGAT4DA6NG13 374 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 ARGFXA6NJG6 315 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 HACD1B0YJ81 288 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A9O60656 530 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 RAB40ALP0C0E4 278 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A6P19224 532 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A1P22309 533 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A4P22310 534 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 CDC25BP30305 580 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 CA5AP35218 305 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 PTPN7P35236 360 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 TNNT3P45378 269 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-212ENST00000597995 GSDMDP57764 484 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 OTUD4Q01804 1114 aaKnown RBP12.2□□□□□ -0.46
TRIM28-212ENST00000597995 GPS2Q13227 327 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 XRCC4Q13426 336 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 IL10RAQ13651 578 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 NFE2L1Q14494 772 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 LONRF2Q1L5Z9 754 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 SIRPB2Q5JXA9 342 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 GPRC6AQ5T6X5 926 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 CPZQ66K79 652 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 ARMC6Q6NXE6 501 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 CERS6Q6ZMG9 384 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 FAM83HQ6ZRV2 1179 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-212ENST00000597995 TMEM126BQ8IUX1 230 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 SPC24Q8NBT2 197 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 ADAMTS17Q8TE56 1095 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms