RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ITGB6P18564 788 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 XRCC1P18887 633 aaPredicted RBP10.35□□□□□ -0.75
LIG1-210ENST00000596332 ACP1P24666 158 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 PMLP29590 882 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 PBLDP30039 288 aaPredicted RBP10.35□□□□□ -0.75
LIG1-210ENST00000596332 ACADVLP49748 655 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 GTF2H3Q13889 308 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 NR1D2Q14995 579 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 RPE65Q16518 533 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 INSCQ1MX18 579 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 RNF187Q5TA31 235 aaPredicted RBP10.35□□□□□ -0.75
LIG1-210ENST00000596332 GUSBP11Q6P575 273 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 ZNF438Q7Z4V0 828 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 STRA8Q7Z7C7 330 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 SLC26A11Q86WA9 606 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 SETD7Q8WTS6 366 aaKnown RBP10.35□□□□□ -0.75
LIG1-210ENST00000596332 ZDHHC1Q8WTX9 485 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIG1-210ENST00000596332 NDNQ99608 321 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 DHRS4Q9BTZ2 278 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 DUSP23Q9BVJ7 150 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 DPEP2Q9H4A9 486 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 PSMD13Q9UNM6 376 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 MTO1Q9Y2Z2 717 aaKnown RBP10.35□□□□□ -0.75
LIG1-210ENST00000596332 DHRS7Q9Y394 339 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 RNF215Q9Y6U7 377 aa10.35□□□□□ -0.75
LIG1-210ENST00000596332 COL27A1Q8IZC6 1860 aaPredicted RBP10.35□□□□□ -0.75
LIG1-210ENST00000596332 UBA6A0AVT1 1052 aaPredicted RBP10.34□□□□□ -0.75
LIG1-210ENST00000596332 SNX2O60749 519 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 KCNK5O95279 499 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 TRIM16O95361 564 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ACSL3O95573 720 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 LDOC1O95751 146 aaPredicted RBP10.34□□□□□ -0.75
LIG1-210ENST00000596332 TSPAN12O95859 305 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ABHD2P08910 425 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 GSTM1P09488 218 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 CKMT2P17540 419 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 IDSP22304 550 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 FDXRP22570 491 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 GMPRP36959 345 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 PPARGP37231 505 aaPredicted RBP10.34□□□□□ -0.75
LIG1-210ENST00000596332 FASLGP48023 281 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 PMS2P54278 862 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 TAS2R39P59534 338 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 GSTM4Q03013 218 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 CFHR1Q03591 330 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 GRB7Q14451 532 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SLC29A2Q14542 456 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SLMAPQ14BN4 828 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 BRD3Q15059 726 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 TRIP6Q15654 476 aaKnown RBP10.34□□□□□ -0.75
LIG1-210ENST00000596332 C14orf28Q4W4Y0 310 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ACSBG2Q5FVE4 666 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 PIM3Q86V86 326 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 CEP97Q8IW35 865 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SLC22A15Q8IZD6 547 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ARL10Q8N8L6 244 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SIDT2Q8NBJ9 832 aaKnown RBP10.34□□□□□ -0.75
LIG1-210ENST00000596332 CD200R1Q8TD46 325 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.34□□□□□ -0.75
LIG1-210ENST00000596332 UBXN4Q92575 508 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 KCNJ9Q92806 393 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 FAM136AQ96C01 138 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 CNDP2Q96KP4 475 aaKnown RBP10.34□□□□□ -0.75
LIG1-210ENST00000596332 TTC1Q99614 292 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 MENTQ9BUN1 341 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 WWP1Q9H0M0 922 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 TSPYL1Q9H0U9 437 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SLC40A1Q9NP59 571 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 OGFRQ9NZT2 677 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SIRPGQ9P1W8 387 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ZFATQ9P243 1243 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 FAM8A1Q9UBU6 413 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 GNPTGQ9UJJ9 305 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 IKZF3Q9UKT9 509 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ACSL5Q9ULC5 683 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 PADI4Q9UM07 663 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 PCDHB1Q9Y5F3 818 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 SPTBN4Q9H254 2564 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 PIKFYVEQ9Y2I7 2098 aa10.34□□□□□ -0.75
LIG1-210ENST00000596332 ASXL3Q9C0F0 2248 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 SPAARA0A1B0GVQ0 90 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 A0A1W2PQM1 296 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 KLHL33A6NCF5 533 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 B4DGG1 531 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 QSOX1O00391 747 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 LIN7AO14910 233 aaPredicted RBP10.33□□□□□ -0.76
LIG1-210ENST00000596332 CTIFO43310 598 aaKnown RBP10.33□□□□□ -0.76
LIG1-210ENST00000596332 TNFSF14O43557 240 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 SPAG6O75602 509 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 MATN4O95460 622 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 FTH1P02794 183 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 SHBGP04278 402 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 CEACAM1P13688 526 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 CD151P48509 253 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 RPA4Q13156 261 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 SEPT7Q16181 437 aaKnown RBP10.33□□□□□ -0.76
LIG1-210ENST00000596332 PLEKHS1Q5SXH7 462 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 HECTD2Q5U5R9 776 aa10.33□□□□□ -0.76
LIG1-210ENST00000596332 PTRHD1Q6GMV3 140 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms