RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PSTPIP1O43586 416 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 AKR1B10O60218 316 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KCNJ13O60928 360 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 RASSF9O75901 435 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 RECKO95980 971 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 AGTP01019 485 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 NTRK1P04629 796 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 CAPN1P07384 714 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 MTHFD1P11586 935 aaKnown RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 CDC25BP30305 580 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 SLC1A1P43005 524 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KPNA2P52292 529 aaKnown RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 PMS2P54278 862 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 MLLT10P55197 1068 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 GSDMDP57764 484 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KLRB1Q12918 225 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 SEMA5AQ13591 1074 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 IL10RAQ13651 578 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ZNF789Q5FWF6 425 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 LDLRAP1Q5SW96 308 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 PRAMEF17Q5VTA0 474 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 CPZQ66K79 652 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KAZNQ674X7 775 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 CAPRIN2Q6IMN6 1127 aaKnown RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 DENND5AQ6IQ26 1287 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 FBXO38Q6PIJ6 1188 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 RANBP10Q6VN20 620 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 GLT6D1Q7Z4J2 308 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 DAAM2Q86T65 1068 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ZC3H18Q86VM9 953 aaKnown RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 PPP1R3BQ86XI6 285 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 RASGRP3Q8IV61 690 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KATNAL2Q8IYT4 538 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 D2HGDHQ8N465 521 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 IPMKQ8NFU5 416 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 BRSK1Q8TDC3 778 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 BLOC1S5Q8TDH9 187 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ADAMTS17Q8TE56 1095 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 UBXN4Q92575 508 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KRT35Q92764 455 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 HAUS1Q96CS2 278 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ZNF501Q96CX3 271 aaPredicted RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 CXorf40BQ96DE9 158 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 STAMBPL1Q96FJ0 436 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ZDHHC12Q96GR4 267 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ZNF514Q96K75 400 aaPredicted RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 RMDN2Q96LZ7 410 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 QKIQ96PU8 341 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS53-213ENST00000572334 PSMG3-AS1Q96PY0 264 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 SRPK1Q96SB4 655 aaKnown RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 WWP1Q9H0M0 922 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ACTL8Q9H568 366 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 MLXIPLQ9NP71 852 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 KCND1Q9NSA2 647 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 LNPEPQ9UIQ6 1025 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 PADI1Q9ULC6 663 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 INTUQ9ULD6 942 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 POLHQ9Y253 713 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 MAN2B2Q9Y2E5 1009 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ALG6Q9Y672 507 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 ARL5AQ9Y689 179 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 DNMT3AQ9Y6K1 912 aaPredicted RBP6.56□□□□□ -1.36
VPS53-213ENST00000572334 DOPEY1Q5JWR5 2465 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 CENPEQ02224 2701 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 CDC14CA4D256 554 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 RCCD1A6NED2 376 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TLCD2A6NGC4 264 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 C21orf140B9A014 251 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 KATNA1O75449 491 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 LCA5LO95447 670 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 RNF224P0DH78 156 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 HLA-DPA1P20036 260 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 RBL1P28749 1068 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 PBLDP30039 288 aaPredicted RBP6.55□□□□□ -1.36
VPS53-213ENST00000572334 RORAP35398 523 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 UQCRFS1P47985 274 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 ARCN1P48444 511 aaKnown RBP6.55□□□□□ -1.36
VPS53-213ENST00000572334 ABRQ12979 859 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 CHAF1BQ13112 559 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 MPP3Q13368 585 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TUBB3Q13509 450 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TRIM14Q14142 442 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TFDP2Q14188 446 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 GPR19Q15760 415 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 PPP2R5EQ16537 467 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 UGT8Q16880 541 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 BCL7AQ4VC05 210 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TFDP3Q5H9I0 405 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 PLEKHS1Q5SXH7 462 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FNBP1LQ5T0N5 605 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FAM69BQ5VUD6 431 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 ZDHHC20Q5W0Z9 365 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 BBS12Q6ZW61 710 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 DET1Q7L5Y6 550 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 PID1Q7Z2X4 250 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 KLHDC8BQ8IXV7 354 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TC2NQ8N9U0 490 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 SIDT2Q8NBJ9 832 aaKnown RBP6.55□□□□□ -1.36
VPS53-213ENST00000572334 RNF214Q8ND24 703 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 OR4K2Q8NGD2 314 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms