RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PPP4R1Q8TF05 950 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 LRRN4Q8WUT4 740 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 TRIM8Q9BZR9 551 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 OLAHQ9NV23 265 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 MYO7BQ6PIF6 2116 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 FER1L5A0AVI2 2057 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 PKDREJQ9NTG1 2253 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 KCNJ13O60928 360 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 HLA-DQB2P05538 268 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 HBQ1P09105 142 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 MTHFD1P11586 935 aaKnown RBP15.72■□□□□ 0.11
CLK3-223ENST00000568488 ATP1A3P13637 1013 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 TCF4P15884 667 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 EEF1GP26641 437 aaKnown RBP15.72■□□□□ 0.11
CLK3-223ENST00000568488 PBLDP30039 288 aaPredicted RBP15.72■□□□□ 0.11
CLK3-223ENST00000568488 FOXL2P58012 376 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 DCDC1P59894 354 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 NFE2L1Q14494 772 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 CCDC122Q5T0U0 273 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 C1orf189Q5VU69 101 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 TIGD7Q6NT04 549 aaPredicted RBP15.72■□□□□ 0.11
CLK3-223ENST00000568488 DUS1LQ6P1R4 473 aaKnown RBP15.72■□□□□ 0.11
CLK3-223ENST00000568488 BNC2Q6ZN30 1099 aaPredicted RBP15.72■□□□□ 0.11
CLK3-223ENST00000568488 ZNF295-AS1Q8N0V1 137 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 CARFQ8N187 725 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLK3-223ENST00000568488 NEK11Q8NG66 645 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 MAML1Q92585 1016 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 C17orf62Q9BQA9 187 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 CLSTN2Q9H4D0 955 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 SYTL2Q9HCH5 934 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 NDOR1Q9UHB4 597 aa15.72■□□□□ 0.11
CLK3-223ENST00000568488 TRGV8A0A0C4DH27 118 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 PRICKLE3O43900 615 aaPredicted RBP15.71■□□□□ 0.11
CLK3-223ENST00000568488 TPM2P07951 284 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 CBSLP0DN79 551 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 RARAP10276 462 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 CBSP35520 551 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 LMAN1P49257 510 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 KRTAP10-9P60411 292 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 AIMP2Q13155 320 aaKnown RBP15.71■□□□□ 0.11
CLK3-223ENST00000568488 KRT81Q14533 505 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 SLC9A5Q14940 896 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 ATP13A5Q4VNC0 1218 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 IRAK1BP1Q5VVH5 260 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 TMC3Q7Z5M5 1100 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 PPP1R32Q7Z5V6 425 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 OR4E2Q8NGC2 313 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 COG1Q8WTW3 980 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 MAGEB10Q96LZ2 347 aaPredicted RBP15.71■□□□□ 0.11
CLK3-223ENST00000568488 C12orf66Q96MD2 445 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 INSM2Q96T92 566 aaPredicted RBP15.71■□□□□ 0.11
CLK3-223ENST00000568488 SLX1AQ9BQ83 275 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 KLHL25Q9H0H3 589 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 PCDH18Q9HCL0 1135 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 C1GALT1Q9NS00 363 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 IFT80Q9P2H3 777 aaPredicted RBP15.71■□□□□ 0.11
CLK3-223ENST00000568488 AMACRQ9UHK6 382 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 TMPRSS11EQ9UL52 423 aa15.71■□□□□ 0.11
CLK3-223ENST00000568488 PCNX1Q96RV3 2341 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 CCDC78A2IDD5 438 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 GSAPA4D1B5 854 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 CCL21O00585 134 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 MFSD11O43934 449 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 ALOX12BO75342 701 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 SSTR2P30874 369 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 PCK1P35558 622 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 OTUD4Q01804 1114 aaKnown RBP15.7■□□□□ 0.1
CLK3-223ENST00000568488 GALNT2Q10471 571 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 MMRN1Q13201 1228 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 BECN1Q14457 450 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 KRT33BQ14525 404 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 DPCR1Q3MIW9 517 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 AGAP7PQ5VUJ5 663 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 ZNF385CQ66K41 422 aaPredicted RBP15.7■□□□□ 0.1
CLK3-223ENST00000568488 B3GNTL1Q67FW5 361 aaPredicted RBP15.7■□□□□ 0.1
CLK3-223ENST00000568488 FCRL6Q6DN72 434 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 TMEM220Q6QAJ8 160 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 CDH24Q86UP0 819 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 GPR135Q8IZ08 494 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 ZNF808Q8N4W9 903 aaPredicted RBP15.7■□□□□ 0.1
CLK3-223ENST00000568488 BCORP1Q8N888 145 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 BRSK1Q8TDC3 778 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 CPLX3Q8WVH0 158 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 N4BP2L2Q92802 583 aaPredicted RBP15.7■□□□□ 0.1
CLK3-223ENST00000568488 PTERQ96BW5 349 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 CCDC120Q96HB5 630 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 AGAP4Q96P64 663 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 VPS35Q96QK1 796 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 WWP1Q9H0M0 922 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 BPIFA1Q9NP55 256 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 MYO1AQ9UBC5 1043 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 SLC24A2Q9UI40 661 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 ZNF711Q9Y462 761 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 SEC16AO15027 2179 aa15.7■□□□□ 0.1
CLK3-223ENST00000568488 CCDC66A2RUB6 948 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 AGPSO00116 658 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 NADKO95544 446 aaPredicted RBP15.69■□□□□ 0.1
CLK3-223ENST00000568488 MMP2P08253 660 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 CD63P08962 238 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms