RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TRIT1Q9H3H1 467 aaKnown RBP20.26■□□□□ 0.83
CLN3-219ENST00000565778 HRASLS2Q9NWW9 162 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 SIDT1Q9NXL6 827 aaKnown RBP20.26■□□□□ 0.83
CLN3-219ENST00000565778 COLEC10Q9Y6Z7 277 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 C17orf113A0A1B0GUU1 675 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 ITGB2P05107 769 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 ACRV1P26436 265 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 FDFT1P37268 417 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 PRLHRP49683 370 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 CACNG1Q06432 222 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 CDH17Q12864 832 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 IL11RAQ14626 422 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 OASLQ15646 514 aaKnown RBP20.25■□□□□ 0.83
CLN3-219ENST00000565778 LINC00303Q3SY05 128 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 ARMC6Q6NXE6 501 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 DUS1LQ6P1R4 473 aaKnown RBP20.25■□□□□ 0.83
CLN3-219ENST00000565778 ZNF449Q6P9G9 518 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 PPP1R21Q6ZMI0 780 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 MICALCLQ6ZW33 695 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 RASGRP3Q8IV61 690 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 LILRA3Q8N6C8 439 aaPredicted RBP20.25■□□□□ 0.83
CLN3-219ENST00000565778 HM13Q8TCT9 377 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 GPN2Q9H9Y4 310 aaPredicted RBP20.25■□□□□ 0.83
CLN3-219ENST00000565778 TMEM184BQ9Y519 407 aaPredicted RBP20.25■□□□□ 0.83
CLN3-219ENST00000565778 SDK2Q58EX2 2172 aa20.25■□□□□ 0.83
CLN3-219ENST00000565778 SMG1Q96Q15 3661 aaKnown RBP20.24■□□□□ 0.83
CLN3-219ENST00000565778 TRBV5-4A0A0C4DH59 114 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 ERI2A8K979 691 aaKnown RBP20.24■□□□□ 0.83
CLN3-219ENST00000565778 CCDC175P0C221 793 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 PRSS56P0CW18 603 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 ARL4DP49703 201 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 PPP1CAP62136 330 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 TBR1Q16650 682 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 CCDC38Q502W7 563 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 CAPRIN2Q6IMN6 1127 aaKnown RBP20.24■□□□□ 0.83
CLN3-219ENST00000565778 XKR5Q6UX68 686 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 UNC5BQ8IZJ1 945 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 CLDN19Q8N6F1 224 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 CCDC89Q8N998 374 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 EXD3Q8N9H8 876 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 UBXN4Q92575 508 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 RNF31Q96EP0 1072 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 FERD3LQ96RJ6 166 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 SLC12A9Q9BXP2 914 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 ULBP3Q9BZM4 244 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 VPS37BQ9H9H4 285 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 RAB6BQ9NRW1 208 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 SMARCAL1Q9NZC9 954 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 HEBP2Q9Y5Z4 205 aa20.24■□□□□ 0.83
CLN3-219ENST00000565778 ATMQ13315 3056 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 IGLV3-16A0A075B6K0 115 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 IGHV5-51A0A0C4DH38 117 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 LOC101059948A0A1B0GTJ6 334 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 UBA6A0AVT1 1052 aaPredicted RBP20.23■□□□□ 0.83
CLN3-219ENST00000565778 OR6C74A6NCV1 312 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 MROH6A6NGR9 719 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 ETS1P14921 441 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 NELFEP18615 380 aaKnown RBP20.23■□□□□ 0.83
CLN3-219ENST00000565778 ABHD18Q0P651 414 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 LAMB3Q13751 1172 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 PRUNE1Q86TP1 453 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 LRRC8AQ8IWT6 810 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 PIANPQ8IYJ0 282 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 SIDT2Q8NBJ9 832 aaKnown RBP20.23■□□□□ 0.83
CLN3-219ENST00000565778 RMDN2Q96LZ7 410 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 MAP3K3Q99759 626 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 EFHD1Q9BUP0 239 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 KIR3DX1Q9H7L2 352 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 SLC24A2Q9UI40 661 aa20.23■□□□□ 0.83
CLN3-219ENST00000565778 OR5K3A6NET4 321 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 MSNP26038 577 aaKnown RBP20.22■□□□□ 0.83
CLN3-219ENST00000565778 NDUFS1P28331 727 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 DBN1Q16643 649 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 DNTTIP2Q5QJE6 756 aaKnown RBP20.22■□□□□ 0.83
CLN3-219ENST00000565778 CYB5D1Q6P9G0 228 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 C6orf15Q6UXA7 325 aaPredicted RBP20.22■□□□□ 0.83
CLN3-219ENST00000565778 OOSP2Q86WS3 158 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 PPP1R3BQ86XI6 285 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 ESX1Q8N693 406 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 OR4E2Q8NGC2 313 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 COG4Q9H9E3 785 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 PDE7BQ9NP56 450 aa20.22■□□□□ 0.83
CLN3-219ENST00000565778 HEATR9A2RTY3 570 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 OR51F1A6NGY5 319 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 ZNF891A8MT65 544 aaPredicted RBP20.21■□□□□ 0.83
CLN3-219ENST00000565778 IFRD1O00458 451 aaPredicted RBP20.21■□□□□ 0.83
CLN3-219ENST00000565778 SPAG6O75602 509 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 KIAA0754O94854 1291 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 SUN1O94901 812 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 DLGAP3O95886 979 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 ZNF28P17035 718 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 GRIA1P42261 906 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 CCNG2Q16589 344 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 ZNF662Q6ZS27 426 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 PHC3Q8NDX5 983 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 HDAC10Q969S8 669 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 SLC45A3Q96JT2 553 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 CD180Q99467 661 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 SEMA5BQ9P283 1151 aa20.21■□□□□ 0.83
CLN3-219ENST00000565778 PAK5Q9P286 719 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms