RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 FOXJ1Q92949 421 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 FUBP1Q96AE4 644 aaKnown RBP10.12□□□□□ -0.79
USP3-219ENST00000561326 HIST1H2AHQ96KK5 128 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 LINC00615Q96LM1 132 aaPredicted RBP10.12□□□□□ -0.79
USP3-219ENST00000561326 C7orf26Q96N11 449 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 ATOH8Q96SQ7 321 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 HIST1H2AJQ99878 128 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 H2AFJQ9BTM1 129 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 GPR174Q9BXC1 333 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 EML4Q9HC35 981 aaKnown RBP10.12□□□□□ -0.79
USP3-219ENST00000561326 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.12□□□□□ -0.79
USP3-219ENST00000561326 ZNHIT2Q9UHR6 403 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 TMEM98Q9Y2Y6 226 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 ABCA7Q8IZY2 2146 aa10.12□□□□□ -0.79
USP3-219ENST00000561326 NPEPPSL1A6NEC2 478 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 A8MT66 165 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 GRID2O43424 1007 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 NPHS1O60500 1241 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 FSBPO95073 299 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 TGDSO95455 350 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 HSPA4LO95757 839 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ENO2P09104 434 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 CYP2A7P20853 494 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 MAP4P27816 1152 aaKnown RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 PBLDP30039 288 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 IGFALSP35858 605 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 KCNC1P48547 511 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 THOP1P52888 689 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ALDH18A1P54886 795 aaKnown RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 PPP2CBP62714 309 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 HERVK_113P63132 956 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 PPP2CAP67775 309 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ARHGAP8P85298 464 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 NFKB2Q00653 900 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 MTAPQ13126 283 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 RPA4Q13156 261 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 SP140Q13342 867 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 RCN2Q14257 317 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 PTK2BQ14289 1009 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 GBX1Q14549 363 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 PFKFB4Q16877 469 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 SLC36A4Q6YBV0 504 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 CYHR1Q6ZMK1 362 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 FAM47EQ6ZV65 393 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 UBE2R2Q712K3 238 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 PIAS4Q8N2W9 510 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 FBXO39Q8N4B4 442 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 BEND7Q8N7W2 519 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 HM13Q8TCT9 377 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ZNF473Q8WTR7 871 aaKnown RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 NAT14Q8WUY8 206 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 EDAQ92838 391 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 GLMNQ92990 594 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 EXT2Q93063 718 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 PHF21BQ96EK2 531 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 SPACA7Q96KW9 195 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ELAC2Q9BQ52 826 aaKnown RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 PLCD4Q9BRC7 762 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 TRMOQ9BU70 441 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 GATA5Q9BWX5 397 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 LGR4Q9BXB1 951 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ERVK-6Q9BXR3 956 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 TRIM55Q9BYV6 548 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 DRC3Q9H069 523 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 ILKAPQ9H0C8 392 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 RDH14Q9HBH5 336 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 PARVBQ9HBI1 364 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 SLCO1B3Q9NPD5 702 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 NUDT4Q9NZJ9 180 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 MBD1Q9UIS9 605 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 OARD1Q9Y530 152 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 OR1A2Q9Y585 309 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 TNPO3Q9Y5L0 923 aaKnown RBP10.11□□□□□ -0.79
USP3-219ENST00000561326 FANCMQ8IYD8 2048 aa10.11□□□□□ -0.79
USP3-219ENST00000561326 SPAG17Q6Q759 2223 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 ARHGEF17Q96PE2 2063 aaPredicted RBP10.1□□□□□ -0.79
USP3-219ENST00000561326 IGHV1OR15-9A0A0B4J2B8 117 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 SLC5A10A0PJK1 596 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 H3BM21 787 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 STX16-NPEPL1H3BU86 382 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 GFYI3L273 518 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 UBXN8O00124 270 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 STX16O14662 325 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 TNFRSF10CO14798 259 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 AXIN1O15169 862 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 MAP3K13O43283 966 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 SNNO75324 88 aaPredicted RBP10.1□□□□□ -0.79
USP3-219ENST00000561326 SUPT7LO94864 414 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 CATP04040 527 aaKnown RBP10.1□□□□□ -0.79
USP3-219ENST00000561326 DCNP07585 359 aaKnown RBP10.1□□□□□ -0.79
USP3-219ENST00000561326 ANXA5P08758 320 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 MTHFD2P13995 350 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 RPIAP49247 311 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 HK2P52789 917 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 KIAA1024LP59773 190 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 ABRQ12979 859 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 TGFBIQ15582 683 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 ANKS6Q68DC2 871 aa10.1□□□□□ -0.79
USP3-219ENST00000561326 SULT1C3Q6IMI6 304 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms