RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 LLGL1Q15334 1064 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 PCSK7Q16549 785 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 ZXDCQ2QGD7 858 aaPredicted RBP17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 FILIP1LQ4L180 1135 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 ATP13A5Q4VNC0 1218 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 FBXO38Q6PIJ6 1188 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 MRGPREQ86SM8 312 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 BEND7Q8N7W2 519 aaPredicted RBP17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 KCTD6Q8NC69 237 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 BPIFA1Q9NP55 256 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 GPN3Q9UHW5 284 aaPredicted RBP17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 PCDHGA10Q9Y5H3 936 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 F8P00451 2351 aa17.35■□□□□ 0.37
TSPAN3-208ENST00000560514 SLC9B1P1A6NJY1 282 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 LCA5LO95447 670 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 CAPN1P07384 714 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 GJC1P36383 396 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 KPNA2P52292 529 aaKnown RBP17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 NFE2L1Q14494 772 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 SSPNQ14714 243 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 DCAF10Q5QP82 559 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 MLIPQ5VWP3 458 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 ZNF571Q7Z3V5 609 aaPredicted RBP17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 ZGRF1Q86YA3 2104 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 ZFPM2Q8WW38 1151 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 HDAC11Q96DB2 347 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 C12orf66Q96MD2 445 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 BARD1Q99728 777 aaKnown RBP17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 ZNF552Q9H707 407 aaPredicted RBP17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 CBX8Q9HC52 389 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 C1GALT1Q9NS00 363 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 AIPL1Q9NZN9 384 aa17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 DNMT3AQ9Y6K1 912 aaPredicted RBP17.34■□□□□ 0.37
TSPAN3-208ENST00000560514 LRRC53A6NM62 1247 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 E7EQ34 232 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 KCNK1O00180 336 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 MATN2O00339 956 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 ZG16O60844 167 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 POLR2CP19387 275 aaPredicted RBP17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 HLA-DPA1P20036 260 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 CA5AP35218 305 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 FOLR3P41439 243 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 KLHL30Q0D2K2 578 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 DPYSL3Q14195 570 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 GSE1Q14687 1217 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 CRB2Q5IJ48 1285 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 LDLRAP1Q5SW96 308 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 TMEM220Q6QAJ8 160 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 Q6ZS92 163 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 CUZD1Q86UP6 607 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 NT5DC3Q86UY8 548 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 KCNMB4Q86W47 210 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 MAP7D3Q8IWC1 876 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 NIPA2Q8N8Q9 360 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 OR1L3Q8NH93 324 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 N4BP2L2Q92802 583 aaPredicted RBP17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 INPP5DQ92835 1189 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 BTBD6Q96KE9 485 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 SLC24A2Q9UI40 661 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 ANAPC7Q9UJX3 599 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 NTNG1Q9Y2I2 539 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 COLEC10Q9Y6Z7 277 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 SVILO95425 2214 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 OTOGQ6ZRI0 2925 aa17.33■□□□□ 0.36
TSPAN3-208ENST00000560514 CCDC88CQ9P219 2028 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 A0A1B0GUH1 482 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 GSAPA4D1B5 854 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 OR2AG2A6NM03 316 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 DDX3XO00571 662 aaKnown RBP eCLIP17.32■□□□□ 0.361e-9■■■■■ 47.1
TSPAN3-208ENST00000560514 CD63P08962 238 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 SLC35G4P0C7Q5 338 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 ITGA3P26006 1051 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 NDUFS1P28331 727 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 PRKCIP41743 596 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 GBE1Q04446 702 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 PPP2R5EQ16537 467 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 ZFYVE27Q5T4F4 411 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 ZDHHC20Q5W0Z9 365 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 DUS1LQ6P1R4 473 aaKnown RBP17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 FAM83HQ6ZRV2 1179 aaPredicted RBP17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 B4GALNT4Q76KP1 1039 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 GPR135Q8IZ08 494 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 RASGEF1AQ8N9B8 481 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 FAM71BQ8TC56 605 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 PPM1MQ96MI6 270 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 TRIB3Q96RU7 358 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 INSM2Q96T92 566 aaPredicted RBP17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 ZNF670Q9BS34 389 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 WWP1Q9H0M0 922 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 KIR3DX1Q9H7L2 352 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 ATP13A2Q9NQ11 1180 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 COPG2Q9UBF2 871 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 NDOR1Q9UHB4 597 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 TMPRSS11EQ9UL52 423 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 PTRH2Q9Y3E5 179 aaKnown RBP17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 FER1L5A0AVI2 2057 aa17.32■□□□□ 0.36
TSPAN3-208ENST00000560514 APCP25054 2843 aa17.31■□□□□ 0.36
TSPAN3-208ENST00000560514 MYO1FO00160 1098 aa17.31■□□□□ 0.36
TSPAN3-208ENST00000560514 ZNF749O43361 778 aa17.31■□□□□ 0.36
TSPAN3-208ENST00000560514 ATXN8OSP0DMR3 200 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms