RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TRIM4Q9C037 500 aa17.31■□□□□ 0.36
HDDC3-205ENST00000559898 GPN2Q9H9Y4 310 aaPredicted RBP17.31■□□□□ 0.36
HDDC3-205ENST00000559898 GUCA1BQ9UMX6 200 aa17.31■□□□□ 0.36
HDDC3-205ENST00000559898 TRBV5-4A0A0C4DH59 114 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 OR6C74A6NCV1 312 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 OR5K3A6NET4 321 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 MIF4GDA9UHW6 222 aaKnown RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 KCNJ13O60928 360 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 SPAG6O75602 509 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 ATP1B2P14415 290 aaPredicted RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 NELFEP18615 380 aaKnown RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 MAP4P27816 1152 aaKnown RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 CETN2P41208 172 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 STAT5AP42229 794 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 PREPP48147 710 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 PRLHRP49683 370 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 KPNA2P52292 529 aaKnown RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 PLCL1Q15111 1095 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 OASLQ15646 514 aaKnown RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 DBN1Q16643 649 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 TMEM135Q86UB9 458 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 RBM12BQ8IXT5 1001 aaKnown RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 PHC3Q8NDX5 983 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 CDKN2AIPNLQ96HQ2 116 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 SLC45A3Q96JT2 553 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 LINC00615Q96LM1 132 aaPredicted RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 RAB33BQ9H082 229 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 STARD5Q9NSY2 213 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 NLE1Q9NVX2 485 aaPredicted RBP17.3■□□□□ 0.36
HDDC3-205ENST00000559898 SEMA5BQ9P283 1151 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 IMPACTQ9P2X3 320 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 SLC2A6Q9UGQ3 507 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 SLC24A2Q9UI40 661 aa17.3■□□□□ 0.36
HDDC3-205ENST00000559898 IGLV3-16A0A075B6K0 115 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 TERTO14746 1132 aaKnown RBP17.29■□□□□ 0.36
HDDC3-205ENST00000559898 LIASO43766 372 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 AP2A1O95782 977 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 PTMAP06454 111 aaKnown RBP17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ZSCAN5DPP0CG00 497 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 FGF5P12034 268 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ITGALP20701 1170 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ACRV1P26436 265 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ABHD18Q0P651 414 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 CDC20Q12834 499 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 SNX1Q13596 522 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 SIX1Q15475 284 aaPredicted RBP17.29■□□□□ 0.36
HDDC3-205ENST00000559898 COLEC12Q5KU26 742 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 PRAMEF17Q5VTA0 474 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 PWWP2BQ6NUJ5 590 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 C16orf46Q6P387 395 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 TAS2R42Q7RTR8 314 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 RASGRP3Q8IV61 690 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 SYCE1Q8N0S2 351 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 OR4E2Q8NGC2 313 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ZDHHC12Q96GR4 267 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 SLC41A2Q96JW4 573 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ZNF778Q96MU6 729 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 COPS8Q99627 209 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 FERMT1Q9BQL6 677 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ZPBPQ9BS86 351 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 OR52A5Q9H2C5 316 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 LRRC40Q9H9A6 602 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ETNK1Q9HBU6 452 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 HRASLS2Q9NWW9 162 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 ZDHHC3Q9NYG2 299 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 CROTQ9UKG9 612 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 RPS6KL1Q9Y6S9 549 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 SPTBP11277 2137 aa17.29■□□□□ 0.36
HDDC3-205ENST00000559898 GOLGA6L9A6NEM1 432 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 ZNF891A8MT65 544 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-205ENST00000559898 TOX3O15405 576 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-205ENST00000559898 SLC28A2O43868 658 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 POLR2CP19387 275 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-205ENST00000559898 GPR19Q15760 415 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 FAM199XQ6PEV8 388 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-205ENST00000559898 C6orf15Q6UXA7 325 aaPredicted RBP17.28■□□□□ 0.36
HDDC3-205ENST00000559898 PRICKLE2Q7Z3G6 844 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 TTC13Q8NBP0 860 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 STARD8Q92502 1023 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 ULK4Q96C45 1275 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 DCUN1D1Q96GG9 259 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 XKR8Q9H6D3 395 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 KIR3DX1Q9H7L2 352 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 COG4Q9H9E3 785 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 LNPEPQ9UIQ6 1025 aa17.28■□□□□ 0.36
HDDC3-205ENST00000559898 CCDC162PA2VCL2 907 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 MROH6A6NGR9 719 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 H7C0S8 307 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 J3QKU1 62 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 BTN3A3O00478 584 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 NTRK1P04629 796 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 SLC35G4P0C7Q5 338 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 FOXN2P32314 431 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 DLSTP36957 453 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 POLE2P56282 527 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 TUBB3Q13509 450 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 GSE1Q14687 1217 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 BRD3Q15059 726 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 DEFB109BQ30KR1 87 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 DNTTIP2Q5QJE6 756 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms