RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 BEND7Q8N7W2 519 aaPredicted RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.05□□□□□ -1.6
SPG11-208ENST00000558155 GRHL3Q8TE85 626 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 INPP5DQ92835 1189 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 RELTQ969Z4 430 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 PTERQ96BW5 349 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 NAP1L5Q96NT1 182 aaPredicted RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 PEBP4Q96S96 227 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 SRPK1Q96SB4 655 aaKnown RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 WDR77Q9BQA1 342 aaPredicted RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 NUP85Q9BW27 656 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 TDRD1Q9BXT4 1180 aaKnown RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 GANQ9H2C0 597 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 C1GALT1Q9NS00 363 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 PCMTD2Q9NV79 361 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 ETNK2Q9NVF9 386 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 SUCOQ9UBS9 1254 aaKnown RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 BTRCQ9Y297 605 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 WDR37Q9Y2I8 494 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 DNMT3AQ9Y6K1 912 aaPredicted RBP5.05□□□□□ -1.6
SPG11-208ENST00000558155 COLEC10Q9Y6Z7 277 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 PKDREJQ9NTG1 2253 aa5.05□□□□□ -1.6
SPG11-208ENST00000558155 CENPEQ02224 2701 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 DOCK10Q96BY6 2186 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 OR6C74A6NCV1 312 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 TMEM191CA6NGB0 347 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 TMEM150CB9EJG8 249 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 E7EQ34 232 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 MATN2O00339 956 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 MATN3O15232 486 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ZNF749O43361 778 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 MTX2O75431 263 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 JRKO75564 520 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 KLF7O75840 302 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 LCA5LO95447 670 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 SNRPB2P08579 225 aaKnown RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 CDH3P22223 829 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 CCNCP24863 283 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 SSTR2P30874 369 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 PCK1P35558 622 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 FOLR3P41439 243 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 PREPP48147 710 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 DCDC1P59894 354 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 CDC16Q13042 620 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 AIMP2Q13155 320 aaKnown RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 XRCC4Q13426 336 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 KRT33BQ14525 404 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ZNF169Q14929 603 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 TLR1Q15399 786 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ASIC2Q16515 512 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 DPYSL2Q16555 572 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 HIF1AQ16665 826 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 IFI16Q16666 785 aaKnown RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 CYP2A13Q16696 494 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 PTCHD3Q3KNS1 767 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ANO6Q4KMQ2 910 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 CT47A1Q5JQC4 288 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 FAM69BQ5VUD6 431 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 AGAP7PQ5VUJ5 663 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 B3GNTL1Q67FW5 361 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 ALG1LQ6GMV1 187 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 PLEKHA7Q6IQ23 1121 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 CCDC70Q6NSX1 233 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 XKRXQ6PP77 449 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 FAM180AQ6UWF9 173 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 FAM198BQ6UWH4 519 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 SPNS3Q6ZMD2 512 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 SPOCD1Q6ZMY3 1216 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 BNC2Q6ZN30 1099 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 B4GALNT4Q76KP1 1039 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 TMC3Q7Z5M5 1100 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 MRGPRGQ86SM5 289 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 MRGPREQ86SM8 312 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 TRAPPC5Q8IUR0 188 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ZNF547Q8IVP9 402 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 GPR135Q8IZ08 494 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 NXPE1Q8N323 547 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ZNF808Q8N4W9 903 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 BCORP1Q8N888 145 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 GPR26Q8NDV2 337 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 NEK11Q8NG66 645 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 GDAP1Q8TB36 358 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ARRDC2Q8TBH0 407 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 PPP4R1Q8TF05 950 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 CPLX3Q8WVH0 158 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 MAML1Q92585 1016 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 HSPH1Q92598 858 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 N4BP2L2Q92802 583 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 NACC2Q96BF6 587 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 POM121Q96HA1 1249 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 VPS50Q96JG6 964 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 AGAP4Q96P64 663 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 TSGA13Q96PP4 275 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 GBP5Q96PP8 586 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 CSPG4P5Q96PW8 444 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 TRAPPC9Q96Q05 1148 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 GPR63Q9BZJ6 419 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 ZBTB20Q9HC78 741 aaPredicted RBP5.04□□□□□ -1.6
SPG11-208ENST00000558155 MAGEE1Q9HCI5 957 aa5.04□□□□□ -1.6
SPG11-208ENST00000558155 SAMSN1Q9NSI8 373 aaKnown RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms