RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 CHRNA4P43681 627 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 EPHB1P54762 984 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 RPL6Q02878 288 aaKnown RBP17.13■□□□□ 0.33
SHOX-204ENST00000554971 DLG1Q12959 904 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 TECRLQ5HYJ1 363 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 ZFP1Q6P2D0 407 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 CILP2Q8IUL8 1156 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 TMEFF1Q8IYR6 380 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 PGAM4Q8N0Y7 254 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 GATA6Q92908 595 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 MCCC1Q96RQ3 725 aaPredicted RBP17.13■□□□□ 0.33
SHOX-204ENST00000554971 WDR55Q9H6Y2 383 aaPredicted RBP17.13■□□□□ 0.33
SHOX-204ENST00000554971 ZBTB26Q9HCK0 441 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 UTP6Q9NYH9 597 aaKnown RBP17.13■□□□□ 0.33
SHOX-204ENST00000554971 VWA7Q9Y334 891 aa17.13■□□□□ 0.33
SHOX-204ENST00000554971 A0A0J9YYE9 177 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 CCDC78A2IDD5 438 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 PRR23AA6NEV1 266 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 ANKRD66B4E2M5 251 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 CASQ2O14958 399 aaPredicted RBP17.12■□□□□ 0.33
SHOX-204ENST00000554971 BUD23O43709 281 aaKnown RBP17.12■□□□□ 0.33
SHOX-204ENST00000554971 AP1G1O43747 822 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 IPO13O94829 963 aaKnown RBP17.12■□□□□ 0.33
SHOX-204ENST00000554971 TRBC1P01850 177 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 IGHV4-34P06331 123 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 CTPS1P17812 591 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 HLA-DPA1P20036 260 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 CNR2P34972 360 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 PTGER3P43115 390 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 ACVR1Q04771 509 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 RALGDSQ12967 914 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 MAPRE2Q15555 327 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 PLK5Q496M5 336 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 GPR150Q8NGU9 434 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 SLC26A7Q8TE54 656 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 RAB7BQ96AH8 199 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 SCRN2Q96FV2 425 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 FEM1CQ96JP0 617 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 NUF2Q9BZD4 464 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 POPDC3Q9HBV1 291 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 FAM86C1Q9NVL1 165 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 C6orf203Q9P0P8 240 aaPredicted RBP17.12■□□□□ 0.33
SHOX-204ENST00000554971 PDP2Q9P2J9 529 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 ZFR2Q9UPR6 939 aaKnown RBP17.12■□□□□ 0.33
SHOX-204ENST00000554971 SLCO1B1Q9Y6L6 691 aa17.12■□□□□ 0.33
SHOX-204ENST00000554971 PTPRZ1P23471 2315 aaPredicted RBP17.12■□□□□ 0.33
SHOX-204ENST00000554971 NPIPB15A6NHN6 443 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 A8MX80 341 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 LHCGRP22888 699 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 EPHA3P29320 983 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 SFSWAPQ12872 951 aaKnown RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 PMS2CLQ68D20 193 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 FAM45BPQ6NSW5 357 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TMEM154Q6P9G4 183 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 SNX32Q86XE0 403 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 CCNYL1Q8N7R7 359 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 LPCAT1Q8NF37 534 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 OR13J1Q8NGT2 312 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 OR2T34Q8NGX1 318 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 FAM45AQ8TCE6 357 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 ZC3H10Q96K80 434 aaKnown RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 KCNH6Q9H252 994 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 B4GALT6Q9UBX8 382 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3DA0A087WVF3 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3IA0A087WXS9 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3EA0A087X179 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3KA0A087X1G2 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3FA6NER0 549 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3LB9A6J9 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 FGF1P05230 155 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 F7P08709 466 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3HP0C7X1 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 HNF1BP35680 557 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 POLR2LP62875 67 aaKnown RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 TMEM259Q4ZIN3 620 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 HECTD2Q5U5R9 776 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3GQ6DHY5 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3CQ6IPX1 549 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 CNSTQ6PJW8 725 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 IZUMO2Q6UXV1 221 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 BNC2Q6ZN30 1099 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 CHSY3Q70JA7 882 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TSPAN33Q86UF1 283 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 TBC1D3Q8IZP1 549 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 DSELQ8IZU8 1212 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 DLG3Q92796 817 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 BIRC7Q96CA5 298 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 SPDL1Q96EA4 605 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 ORAI3Q9BRQ5 295 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 KLHL4Q9C0H6 718 aa17.11■□□□□ 0.33
SHOX-204ENST00000554971 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 ARIH1Q9Y4X5 557 aaPredicted RBP17.11■□□□□ 0.33
SHOX-204ENST00000554971 TP53BP1Q12888 1972 aaPredicted RBP17.1■□□□□ 0.33
SHOX-204ENST00000554971 A0A1W2PQ67 120 aa17.1■□□□□ 0.33
SHOX-204ENST00000554971 LATO43561 262 aa17.1■□□□□ 0.33
SHOX-204ENST00000554971 WISP3O95389 354 aaPredicted RBP17.1■□□□□ 0.33
SHOX-204ENST00000554971 NDST3O95803 873 aa17.1■□□□□ 0.33
SHOX-204ENST00000554971 PIRTP0C851 137 aa17.1■□□□□ 0.33
SHOX-204ENST00000554971 NUDT2P50583 147 aa17.1■□□□□ 0.33
SHOX-204ENST00000554971 PTPN5P54829 565 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms