RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SEMG2Q02383 582 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TWF1Q12792 350 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 GRIK2Q13002 908 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 DSG2Q14126 1118 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MRPL58Q14197 206 aaKnown RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 FXNQ16595 210 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 AASDHQ4L235 1098 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CCSAPQ6IQ19 270 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TXNDC11Q6PKC3 985 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TRAF7Q6Q0C0 670 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ZC3H7AQ8IWR0 971 aaKnown RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CLEC4FQ8N1N0 589 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 C10orf111Q8N326 155 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 BBS5Q8N3I7 341 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TTC30BQ8N4P2 665 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 GOLM1Q8NBJ4 401 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 OR10A6Q8NH74 314 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CLHC1Q8NHS4 586 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ITFG1Q8TB96 612 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TBC1D15Q8TC07 691 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 OSCP1Q8WVF1 389 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 THAP11Q96EK4 314 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ZIC5Q96T25 663 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CGREF1Q99674 301 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 NACA2Q9H009 215 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PAIP1Q9H074 479 aaKnown RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 IPPKQ9H8X2 491 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ZFP14Q9HCL3 533 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 SLC6A13Q9NSD5 602 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 EXD2Q9NVH0 621 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 RIC8BQ9NVN3 520 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PCDHB3Q9Y5E6 796 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 SCN5AQ14524 2016 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 A8MX80 341 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 AXIN1O15169 862 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TAPBPO15533 448 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 KCNH1O95259 989 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ALPLP05186 524 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CDH1P12830 882 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PAX3P23760 479 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MRPL19P49406 292 aaKnown RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 HLCSP50747 726 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PSMD7P51665 324 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PRKCZQ05513 592 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TRAF3Q13114 568 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 GTF2H2Q13888 395 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 DAG1Q14118 895 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 IMPG1Q17R60 797 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 C5orf22Q49AR2 442 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 SLC44A4Q53GD3 710 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 SGO1Q5FBB7 561 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CCNYL2Q5T2Q4 361 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ATXN7L2Q5T6C5 722 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 RNF219Q5W0B1 726 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 GTF2H2CQ6P1K8 395 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 FAM151BQ6UXP7 276 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MBOAT1Q6ZNC8 495 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 FRA10AC1Q70Z53 315 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PROSER1Q86XN7 944 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PHACTR4Q8IZ21 702 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ABI1Q8IZP0 508 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 DPP10Q8N608 796 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 KRTCAP2Q8N6L1 136 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PDPRQ8NCN5 879 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 BPIFB6Q8NFQ5 453 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MIPOL1Q8TD10 442 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 SLC22A17Q8WUG5 538 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 KCNJ9Q92806 393 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PHOX2BQ99453 314 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 C17orf80Q9BSJ5 609 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 BDH2Q9BUT1 245 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 APOL5Q9BWW9 433 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 CIPCQ9C0C6 399 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ADNPQ9H2P0 1102 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MUC13Q9H3R2 512 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TOR3AQ9H497 397 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 RRAGCQ9HB90 399 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PLGRKTQ9HBL7 147 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 HEBP1Q9NRV9 189 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PKD2L2Q9NZM6 624 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 FCF1Q9Y324 198 aaKnown RBP7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PCDHB9Q9Y5E1 797 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PRSS21Q9Y6M0 314 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PLXNB3Q9ULL4 1909 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 KANSL1LA0AUZ9 987 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SH3PXD2BA1X283 911 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 J3QRK9 145 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SYN3O14994 580 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 COCHO43405 550 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 EOMESO95936 686 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 C1QCP02747 245 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ANXA6P08133 673 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 C7P10643 843 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 SLC2A4P14672 509 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 GGT1P19440 569 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 PRKACGP22612 351 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 MZF1P28698 734 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 CORO1AP31146 461 aaKnown RBP7.37□□□□□ -1.23
LIMA1-213ENST00000552720 GKP32189 559 aa7.37□□□□□ -1.23
LIMA1-213ENST00000552720 ATP5C1P36542 298 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms