RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 FNBP1LQ5T0N5 605 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 ARMC6Q6NXE6 501 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 FAM199XQ6PEV8 388 aaPredicted RBP12.54□□□□□ -0.4
PTCH1-218ENST00000548945 ZNF567Q8N184 647 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 EFCAB3Q8N7B9 438 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 RNF214Q8ND24 703 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 OR2L2Q8NH16 312 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 ZNF398Q8TD17 642 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 P3H4Q92791 437 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 ZNF501Q96CX3 271 aaPredicted RBP12.54□□□□□ -0.4
PTCH1-218ENST00000548945 LINC00615Q96LM1 132 aaPredicted RBP12.54□□□□□ -0.4
PTCH1-218ENST00000548945 C12orf66Q96MD2 445 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 C19orf43Q9BQ61 176 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 SLC25A23Q9BV35 468 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 TRIM55Q9BYV6 548 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 AKIRIN1Q9H9L7 192 aaPredicted RBP12.54□□□□□ -0.4
PTCH1-218ENST00000548945 SYTL2Q9HCH5 934 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 ABHD10Q9NUJ1 306 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 IMP3Q9NV31 184 aaKnown RBP12.54□□□□□ -0.4
PTCH1-218ENST00000548945 SAE1Q9UBE0 346 aaPredicted RBP12.54□□□□□ -0.4
PTCH1-218ENST00000548945 SLC24A2Q9UI40 661 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 TRHDEQ9UKU6 1024 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 VPS4AQ9UN37 437 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 HEBP2Q9Y5Z4 205 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 COLEC10Q9Y6Z7 277 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 CREBBPQ92793 2442 aa12.54□□□□□ -0.4
PTCH1-218ENST00000548945 BLACEA4D250 179 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 TTLL8A6PVC2 850 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 STX7O15400 261 aaKnown RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 GPR39O43194 453 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 CBFA2T2O43439 604 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 SPOPO43791 374 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 KLK3P07288 261 aaPredicted RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 TPM1P09493 284 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 RAB40ALP0C0E4 278 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 SLC35G4P0C7Q5 338 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 PECAM1P16284 738 aaPredicted RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 COMTP21964 271 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 AKT1P31749 480 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 HADHBP55084 474 aaKnown RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 IL10RAQ13651 578 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 BCL7AQ4VC05 210 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 CAPRIN2Q6IMN6 1127 aaKnown RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 CERS6Q6ZMG9 384 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 SPOCD1Q6ZMY3 1216 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 PID1Q7Z2X4 250 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 HPS6Q86YV9 775 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 TMEM126BQ8IUX1 230 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 SLC25A41Q8N5S1 370 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 IPMKQ8NFU5 416 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 CPT1CQ8TCG5 803 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 ADAMTS17Q8TE56 1095 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 QKIQ96PU8 341 aaKnown RBP eCLIP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 RUFY1Q96T51 708 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 INSM2Q96T92 566 aaPredicted RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 CCM2Q9BSQ5 444 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 FSD1LQ9BXM9 530 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 WWP1Q9H0M0 922 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 ING2Q9H160 280 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 NHEJ1Q9H9Q4 299 aaPredicted RBP12.53□□□□□ -0.4
PTCH1-218ENST00000548945 FANCEQ9HB96 536 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 LRRC4CQ9HCJ2 640 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 ACSS2Q9NR19 701 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 SPTLC3Q9NUV7 552 aa12.53□□□□□ -0.4
PTCH1-218ENST00000548945 LRBAP50851 2863 aa12.52□□□□□ -0.4
PTCH1-218ENST00000548945 FER1L5A0AVI2 2057 aa12.52□□□□□ -0.4
PTCH1-218ENST00000548945 OR6C74A6NCV1 312 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 C5orf60A6NFR6 353 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 C2orf81A6NN90 581 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CEACAM4O75871 244 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 ANXA9O76027 345 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 SORBS2O94875 1100 aaKnown RBP12.52□□□□□ -0.41
PTCH1-218ENST00000548945 PRAMEF1O95521 474 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CA5AP35218 305 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 KPNA2P52292 529 aaKnown RBP12.52□□□□□ -0.41
PTCH1-218ENST00000548945 RPS18P62269 152 aaKnown RBP12.52□□□□□ -0.41
PTCH1-218ENST00000548945 PRKAA1Q13131 559 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 GPS2Q13227 327 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 TAF1AQ15573 450 aaPredicted RBP12.52□□□□□ -0.41
PTCH1-218ENST00000548945 GPR19Q15760 415 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CPZQ66K79 652 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 ZC3H18Q86VM9 953 aaKnown RBP12.52□□□□□ -0.41
PTCH1-218ENST00000548945 KATNAL2Q8IYT4 538 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 DSELQ8IZU8 1212 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CPT1BQ92523 772 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 MR1Q95460 341 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CHP1Q99653 195 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 NLNQ9BYT8 704 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 C1GALT1Q9NS00 363 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 POMT2Q9UKY4 750 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 ZNF451Q9Y4E5 1061 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CFAP20Q9Y6A4 193 aaKnown RBP12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CNTRLQ7Z7A1 2325 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 CCDC88CQ9P219 2028 aa12.52□□□□□ -0.41
PTCH1-218ENST00000548945 hCG_1818297A0A087WSY0 165 aa12.51□□□□□ -0.41
PTCH1-218ENST00000548945 C17orf113A0A1B0GUU1 675 aa12.51□□□□□ -0.41
PTCH1-218ENST00000548945 AGAP14A8MT82 685 aa12.51□□□□□ -0.41
PTCH1-218ENST00000548945 MEN1O00255 615 aa12.51□□□□□ -0.41
PTCH1-218ENST00000548945 BUD23O43709 281 aaKnown RBP12.51□□□□□ -0.41
PTCH1-218ENST00000548945 SRP72O76094 671 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms