RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 THNSL1Q8IYQ7 743 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 GBGT1Q8N5D6 347 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 NKAIN3Q8N8D7 197 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 B4GALNT2Q8NHY0 566 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 BBS10Q8TAM1 723 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 SEMA4DQ92854 862 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 HDAC11Q96DB2 347 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 OXNAD1Q96HP4 312 aaPredicted RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 ZNF558Q96NG5 402 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 MS4A10Q96PG2 267 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 NEK1Q96PY6 1258 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 SLC22A12Q96S37 553 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 ZPBPQ9BS86 351 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 ABHD6Q9BV23 337 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 NUP85Q9BW27 656 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 DPAGT1Q9H3H5 408 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 NOL11Q9H8H0 719 aaKnown RBP3.98□□□□□ -1.77
VPS29-205ENST00000548539 ANKZF1Q9H8Y5 726 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 GRPEL1Q9HAV7 217 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 LRRC4Q9HBW1 653 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 EQTNQ9NQ60 294 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 WNT16Q9UBV4 365 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 TTC3P53804 2025 aa3.98□□□□□ -1.77
VPS29-205ENST00000548539 A0A1W2PPM1 405 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 ANKUB1A6NFN9 424 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 SERINC4A6NH21 518 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 LACTBL1A8MY62 500 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 ZNF587BE7ETH6 402 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 MEIS2O14770 477 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 BMP10O95393 424 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PENKP01210 267 aaPredicted RBP3.97□□□□□ -1.77
VPS29-205ENST00000548539 LINGO3P0C6S8 592 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 FCGR1AP12314 374 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PTAFRP25105 342 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PSMC4P43686 418 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 CDK3Q00526 305 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PLIN5Q00G26 463 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PRKAA1Q13131 559 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 KLHL26Q53HC5 615 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 HECTD3Q5T447 861 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 OR7E24Q6IFN5 339 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 GFRALQ6UXV0 394 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PPP1R21Q6ZMI0 780 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 ZBTB49Q6ZSB9 765 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 CREB3L2Q70SY1 520 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 TMEM219Q86XT9 240 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 FOXP4Q8IVH2 680 aaPredicted RBP3.97□□□□□ -1.77
VPS29-205ENST00000548539 FAM114A1Q8IWE2 563 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 CAMKVQ8NCB2 501 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 NR4A3Q92570 626 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PHF21AQ96BD5 680 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 SPDL1Q96EA4 605 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PHF21BQ96EK2 531 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 ADGRG7Q96K78 797 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 CFAP57Q96MR6 1250 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 GBP5Q96PP8 586 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 EDEM3Q9BZQ6 932 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 IL25Q9H293 177 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 HHATLQ9HCP6 504 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 PRMT7Q9NVM4 692 aaPredicted RBP3.97□□□□□ -1.77
VPS29-205ENST00000548539 MIOSQ9NXC5 875 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 NPAP1Q9NZP6 1156 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 TUBE1Q9UJT0 475 aa3.97□□□□□ -1.77
VPS29-205ENST00000548539 NOL7Q9UMY1 257 aaKnown RBP3.97□□□□□ -1.77
VPS29-205ENST00000548539 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.97□□□□□ -1.77
VPS29-205ENST00000548539 FEZF1A0PJY2 475 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 HNRNPCL2B2RXH8 293 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TRIM77I1YAP6 450 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 EIF3DO15371 548 aaKnown RBP eCLIP3.96□□□□□ -1.78
VPS29-205ENST00000548539 ZNHIT1O43257 154 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 LDB3O75112 727 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 CAMTA2O94983 1202 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 GCNT3O95395 438 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 FYNP06241 537 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 OR52Z1P0C646 297 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 HLA-DOBP13765 273 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 PCGF2P35227 344 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 NPY4RP50391 375 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TUBA1BP68363 451 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TFCP2Q12800 502 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 HSPB3Q12988 150 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 GAGE2BQ13066 116 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 ZNF234Q14588 700 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 VWC2Q2TAL6 325 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 GAGE2EQ4V326 116 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 RAB6CQ53S08 254 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 GCNT6Q5T4J0 391 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 STXBP5Q5T5C0 1151 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 GAGE2AQ6NT46 116 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 FAM122CQ6P4D5 195 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 TRAT1Q6PIZ9 186 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 DCLRE1AQ6PJP8 1040 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 ZNF441Q8N8Z8 693 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 ELP5Q8TE02 316 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 SMPDL3BQ92485 455 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 ZNF479Q96JC4 524 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 FAM84BQ96KN1 310 aaPredicted RBP3.96□□□□□ -1.78
VPS29-205ENST00000548539 ADPGKQ9BRR6 497 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 SYT17Q9BSW7 474 aa3.96□□□□□ -1.78
VPS29-205ENST00000548539 MOV10L1Q9BXT6 1211 aaKnown RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms