RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NAT14Q8WUY8 206 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 P3H4Q92791 437 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 STAMBPL1Q96FJ0 436 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 SLC41A2Q96JW4 573 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 INSM2Q96T92 566 aaPredicted RBP8.28□□□□□ -1.08
USP28-215ENST00000545608 VAT1Q99536 393 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 MAP3K3Q99759 626 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 HACD3Q9P035 362 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 LNPEPQ9UIQ6 1025 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 PADI1Q9ULC6 663 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 TFR2Q9UP52 801 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 CFAP20Q9Y6A4 193 aaKnown RBP8.28□□□□□ -1.08
USP28-215ENST00000545608 CDC14CA4D256 554 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 AKR1B15C9JRZ8 316 aaPredicted RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 STX7O15400 261 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 MTSS1O43312 755 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 CREG1O75629 220 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 NTRK1P04629 796 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 HLA-DPA1P20036 260 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 RBL1P28749 1068 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 PBLDP30039 288 aaPredicted RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 HADHBP55084 474 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 PSMA6P60900 246 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 SRSF1Q07955 248 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP28-215ENST00000545608 TBX2Q13207 712 aaPredicted RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 OLIG2Q13516 323 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 DNASE1L3Q13609 305 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 SEPT6Q14141 434 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP28-215ENST00000545608 LACTB2Q53H82 288 aaPredicted RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 TFDP3Q5H9I0 405 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 FNBP1LQ5T0N5 605 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 METRNLQ641Q3 311 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 PWWP2BQ6NUJ5 590 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 DUS1LQ6P1R4 473 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 FAM199XQ6PEV8 388 aaPredicted RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 DET1Q7L5Y6 550 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 KATNAL2Q8IYT4 538 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 RCOR2Q8IZ40 523 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 SIDT2Q8NBJ9 832 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 RNF214Q8ND24 703 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 CT55Q8WUE5 264 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 UBXN4Q92575 508 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 KRT35Q92764 455 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 QKIQ96PU8 341 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP28-215ENST00000545608 RUFY1Q96T51 708 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 GORASP1Q9BQQ3 440 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 FICDQ9BVA6 458 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 HEMGNQ9BXL5 484 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 ZCCHC2Q9C0B9 1178 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 WWP1Q9H0M0 922 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 PDE7BQ9NP56 450 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 LHX9Q9NQ69 397 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 IMP3Q9NV31 184 aaKnown RBP8.27□□□□□ -1.09
USP28-215ENST00000545608 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP28-215ENST00000545608 RSPH14Q9UHP6 348 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 RARRES3Q9UL19 164 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 POLHQ9Y253 713 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 TP53TG5Q9Y2B4 290 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 PKP3Q9Y446 797 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 KCTD3Q9Y597 815 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 ARL5AQ9Y689 179 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 HECTD1Q9ULT8 2610 aa8.27□□□□□ -1.09
USP28-215ENST00000545608 PIPSLA2A3N6 862 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 OR5K3A6NET4 321 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 MGAT4DA6NG13 374 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 HACD1B0YJ81 288 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 H7C0C1 242 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 CDK2AP1O14519 115 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 SGTAO43765 313 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 MT-ND3P03897 115 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 EBLN1P0CF75 366 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 MTHFD1P11586 935 aaKnown RBP8.26□□□□□ -1.09
USP28-215ENST00000545608 ZNF16P17020 682 aaPredicted RBP8.26□□□□□ -1.09
USP28-215ENST00000545608 MSH3P20585 1137 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 ADRA1AP35348 466 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 TNNT3P45378 269 aaPredicted RBP8.26□□□□□ -1.09
USP28-215ENST00000545608 ATP5OP48047 213 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 ARCN1P48444 511 aaKnown RBP8.26□□□□□ -1.09
USP28-215ENST00000545608 GEMP55040 296 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 XIAPP98170 497 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 ACY1Q03154 408 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 MSLNQ13421 630 aaPredicted RBP8.26□□□□□ -1.09
USP28-215ENST00000545608 XRCC4Q13426 336 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 TUBB3Q13509 450 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 ITGA9Q13797 1035 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 PLCL1Q15111 1095 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 LONRF2Q1L5Z9 754 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 KLHL35Q6PF15 583 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 FBXO38Q6PIJ6 1188 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 RANBP10Q6VN20 620 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 MICALCLQ6ZW33 695 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 BBS12Q6ZW61 710 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 CNGA4Q8IV77 575 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 CCDC50Q8IVM0 306 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 LILRA3Q8N6C8 439 aaPredicted RBP8.26□□□□□ -1.09
USP28-215ENST00000545608 TC2NQ8N9U0 490 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 OR4K2Q8NGD2 314 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 C12orf66Q96MD2 445 aa8.26□□□□□ -1.09
USP28-215ENST00000545608 PPM1MQ96MI6 270 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms