RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PLEKHN1Q494U1 663 aaPredicted RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 KHDC1Q4VXA5 237 aaKnown RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 OR6B2Q6IFH4 312 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TRAT1Q6PIZ9 186 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 VSTM1Q6UX27 236 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 CAMKMTQ7Z624 323 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 OR10J5Q8NHC4 309 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TFAP2BQ92481 460 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 PTP4A1Q93096 173 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 REPS1Q96D71 796 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 C7orf50Q9BRJ6 194 aaKnown RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 LEF1Q9UJU2 399 aaPredicted RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 ANGEL1Q9UNK9 670 aaKnown RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 PCDHB11Q9Y5F2 797 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 GPR45Q9Y5Y3 372 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 USP17L13C9JLJ4 530 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 USP17L17D6RBQ6 530 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 NKRFO15226 690 aaKnown RBP eCLIP8.78□□□□□ -1
VPS13D-212ENST00000543766 DAPK3O43293 454 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 PRKRAO75569 313 aaKnown RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 OR4E1P0C645 316 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 BDKRB2P30411 391 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 METAP2P50579 478 aaKnown RBP eCLIP8.78□□□□□ -1
VPS13D-212ENST00000543766 MAZP56270 477 aaKnown RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 TFCP2Q12800 502 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MAML2Q8IZL2 1156 aaPredicted RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 FAM169BQ8N8A8 192 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TMIEQ8NEW7 156 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 SLC30A5Q8TAD4 765 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 IGDCC4Q8TDY8 1250 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 STAMQ92783 540 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MARS2Q96GW9 593 aaKnown RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 EGFL8Q99944 293 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TTYH2Q9BSA4 534 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 HIPK3Q9H422 1215 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 COPS7BQ9H9Q2 264 aaPredicted RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 ABCB10Q9NRK6 738 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 RAB23Q9ULC3 237 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 SLC9A8Q9Y2E8 581 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 SPACA6W5XKT8 324 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 RPTORQ8N122 1335 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 A0A1W2PN81 502 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 SAC3D1A6NKF1 404 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 ATF2P15336 505 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 CHRNA7P36544 502 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MAP3K8P41279 467 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 SLC1A4P43007 532 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 CRATP43155 626 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 CHN2P52757 468 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 AP1S2P56377 157 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MLF1P58340 268 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TAS2R40P59535 323 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MAP3K10Q02779 954 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MTFR1Q15390 333 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MTX3Q5HYI7 312 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 SEL1L3Q68CR1 1132 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 OTOAQ7RTW8 1153 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 LRRC57Q8N9N7 239 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TMEM145Q8NBT3 493 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 ETNPPLQ8TBG4 499 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TRAPPC12Q8WVT3 735 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 CHFRQ96EP1 664 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MFSD3Q96ES6 412 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 TMEM80Q96HE8 168 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 LRIG1Q96JA1 1093 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 MIPEPQ99797 713 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 VPS25Q9BRG1 176 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 METTL22Q9BUU2 404 aaPredicted RBP8.78□□□□□ -1
VPS13D-212ENST00000543766 MND1Q9BWT6 205 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 ZCCHC4Q9H5U6 513 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 GNPTGQ9UJJ9 305 aa8.78□□□□□ -1
VPS13D-212ENST00000543766 NHSQ6T4R5 1651 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 ISPDA4D126 451 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 PDZK1P1A8MUH7 402 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 KCNQ2O43526 872 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 OR1E1P30953 314 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 EIF2S3P41091 472 aaKnown RBP8.77□□□□□ -1
VPS13D-212ENST00000543766 DMWDQ09019 674 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 PLA2G7Q13093 441 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 THOC5Q13769 683 aaKnown RBP8.77□□□□□ -1
VPS13D-212ENST00000543766 PDK3Q15120 406 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 ZDHHC24Q6UX98 284 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 NDUFAF7Q7L592 441 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 ZNF557Q8N988 423 aaPredicted RBP8.77□□□□□ -1
VPS13D-212ENST00000543766 SLC24A4Q8NFF2 622 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 RHOVQ96L33 236 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 KCNA7Q96RP8 456 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 EBF3Q9H4W6 596 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 SRA1Q9HD15 236 aaKnown RBP8.77□□□□□ -1
VPS13D-212ENST00000543766 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.77□□□□□ -1
VPS13D-212ENST00000543766 USP18Q9UMW8 372 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 CHKBQ9Y259 395 aa8.77□□□□□ -1
VPS13D-212ENST00000543766 UMODL1Q5DID0 1318 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 MYO1GB0I1T2 1018 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 SUPT3HB4E1H0 165 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 OR10H2O60403 315 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 IGKV5-2P06315 115 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 ACVR2AP27037 513 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 AVPR2P30518 371 aa8.77□□□□□ -1.01
VPS13D-212ENST00000543766 SLC1A2P43004 574 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms