RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 C16orf89Q6UX73 402 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 ANKS3Q6ZW76 656 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 CHST15Q7LFX5 561 aaPredicted RBP7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 DEFB128Q7Z7B8 93 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 SPPL2BQ8TCT7 592 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 RNF34Q969K3 372 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 RCN3Q96D15 328 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 CELF6Q96J87 481 aaKnown RBP7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 RTKNQ9BST9 563 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 ZNF717Q9BY31 904 aaPredicted RBP7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 NOL11Q9H8H0 719 aaKnown RBP7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 LIN7BQ9HAP6 207 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 PRDM5Q9NQX1 630 aaPredicted RBP7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 ACSS2Q9NR19 701 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 VPS4AQ9UN37 437 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 CROCCQ5TZA2 2017 aa7.9□□□□□ -1.15
PDLIM5-221ENST00000542407 E9PAM4 449 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 H7C4K7 107 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 FGF10O15520 208 aaPredicted RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SCO2O43819 266 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 RSL1D1O76021 490 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ALDH1A2O94788 518 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 APOA4P06727 396 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 GNAO1P09471 354 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 MYL4P12829 197 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ME2P23368 584 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 YWHAQP27348 245 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 PKLRP30613 574 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 EEF1A1P68104 462 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 EEF1A2Q05639 463 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 DNASE1L3Q13609 305 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 EEF1A1P5Q5VTE0 462 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CNKSR3Q6P9H4 555 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TRMT10BQ6PF06 316 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CYS1Q717R9 158 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 IGFN1Q86VF2 1251 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CARM1Q86X55 608 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 C10orf107Q8IVU9 208 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CNTD1Q8N815 330 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 PCYOX1LQ8NBM8 494 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 OR8K3Q8NH51 312 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 C2orf15Q8WU43 125 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ZNF689Q96CS4 500 aaPredicted RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TMEM68Q96MH6 324 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 C17orf80Q9BSJ5 609 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TTLL2Q9BWV7 592 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SIK2Q9H0K1 926 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 NOL6Q9H6R4 1146 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 MTRRQ9UBK8 725 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 HMX2A2RU54 273 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 RAB19A4D1S5 217 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 BTN3A1O00481 513 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SHOXO15266 292 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SLC7A4O43246 635 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 MAFKO60675 156 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 AP2A1O95782 977 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CLIC3O95833 236 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TBX18O95935 607 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CSH1P0DML2 217 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CSH2P0DML3 217 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ATF4P18848 351 aaPredicted RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 GMPRP36959 345 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ARSDP51689 593 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ARPP19P56211 112 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TXNL4AP83876 142 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TAF10Q12962 218 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TUSC1Q2TAM9 212 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SLC9B1Q4ZJI4 515 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TPGS2Q68CL5 300 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TMC5Q6UXY8 1006 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CYP2R1Q6VVX0 501 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ZBTB49Q6ZSB9 765 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 BTLAQ7Z6A9 289 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 KIAA2013Q8IYS2 634 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 FBXL6Q8N531 539 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TMEM102Q8N9M5 508 aaPredicted RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CIDECQ96AQ7 238 aaPredicted RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 EXOC2Q96KP1 924 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 MARK4Q96L34 752 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TEKT5Q96M29 485 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 RPRD1AQ96P16 312 aaPredicted RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SLC39A8Q9C0K1 460 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 TFB2MQ9H5Q4 396 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 COG4Q9H9E3 785 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CBY1Q9Y3M2 126 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CDY1Q9Y6F8 540 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 IGLV3-10A0A075B6K4 115 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 SAC3D1A6NKF1 404 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 PRSS44E7EML9 344 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 H0Y858 1186 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 BRINP1O60477 761 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 BCL10O95999 233 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 PCSK2P16519 638 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 NFKB1P19838 968 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 ITGB8P26012 769 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 MGAT1P26572 445 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 EEF1DP29692 281 aaKnown RBP7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 C1QTNF8P60827 252 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 CRADDP78560 199 aa7.89□□□□□ -1.15
PDLIM5-221ENST00000542407 DUSP4Q13115 394 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms