RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TMPRSS11EQ9UL52 423 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 A8MX80 341 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 GIPC1O14908 333 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 OTCP00480 354 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TYRP14679 529 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 VASPP50552 380 aaPredicted RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 LRRC36Q1X8D7 754 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 SULT1C3Q6IMI6 304 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ADGRG2Q8IZP9 1017 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 SFRP1Q8N474 314 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CHST14Q8NCH0 376 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 FRS2Q8WU20 508 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 SLCO4A1Q96BD0 722 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 MRGPRX3Q96LB0 322 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 PKP2Q99959 881 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 SLC39A3Q9BRY0 314 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CD244Q9BZW8 370 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 BRD9Q9H8M2 597 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CHCHD3Q9NX63 227 aaKnown RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 KCTD5Q9NXV2 234 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TBC1D14Q9P2M4 693 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ANGPT2O15123 496 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 CAPN1P07384 714 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 MSH3P20585 1137 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SPINT3P49223 89 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 TMEM154Q6P9G4 183 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 LAYNQ6UX15 382 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 RFLNAQ6ZTI6 216 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SPATA24Q86W54 205 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SLC15A3Q8IY34 581 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 POF1BQ8WVV4 589 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 ZUFSPQ96AP4 578 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 YIPF2Q9BWQ6 316 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 LINC00597Q9H2U6 94 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SMOXQ9NWM0 555 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 DTNAQ9Y4J8 743 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 PCDHA9Q9Y5H5 950 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 LAMA2P24043 3122 aaKnown RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 GRXCR2A6NFK2 248 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 LSM1O15116 133 aaKnown RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 RNASEH2AO75792 299 aaKnown RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 VCLP18206 1134 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SLC6A2P23975 617 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 HTR6P50406 440 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SEMG2Q02383 582 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 TLR1Q15399 786 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 TTLL9Q3SXZ7 439 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 TMEM240Q5SV17 173 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 RARS2Q5T160 578 aaKnown RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 COL13A1Q5TAT6 717 aaPredicted RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 OR52E8Q6IFG1 317 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 GDPD4Q6W3E5 623 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 Q6ZVU0 165 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 APLFQ8IW19 511 aaPredicted RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 ARL10Q8N8L6 244 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 CATSPER1Q8NEC5 780 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 LRRC58Q96CX6 371 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 OTUB2Q96DC9 234 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 DCUN1D1Q96GG9 259 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 LRGUKQ96M69 825 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 COPS8Q99627 209 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 SLC2A11Q9BYW1 496 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 IPPKQ9H8X2 491 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 COPS7BQ9H9Q2 264 aaPredicted RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 PIDD1Q9HB75 910 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 GID8Q9NWU2 228 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 B4GALT6Q9UBX8 382 aa13.54□□□□□ -0.24
RTN3-210ENST00000540798 CNOT11Q9UKZ1 510 aaKnown RBP13.54□□□□□ -0.24
RTN3-210ENST00000540798 DPPA5A6NC42 116 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 SLC22A3O75751 556 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 UGT2B4P06133 528 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 POU2F2P09086 479 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 HNRNPA1P09651 372 aaKnown RBP eCLIP13.53□□□□□ -0.24
RTN3-210ENST00000540798 CTNNB1P35222 781 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 UFM1P61960 85 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 EMX2Q04743 252 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 UBE3AQ05086 875 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 SMU1Q2TAY7 513 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 IL23RQ5VWK5 629 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 TTC23LQ6PF05 361 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 METTL6Q8TCB7 284 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 ASIC4Q96FT7 647 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 NTMT1Q9BV86 223 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 TRIM54Q9BYV2 358 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 CMTM6Q9NX76 183 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 FBXO10Q9UK96 956 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 ERVW-1Q9UQF0 538 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 FAM234BA2RU67 622 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 RNASEH1O60930 286 aaKnown RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 LYNP07948 512 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 IL12AP29459 219 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 SLC7A1P30825 629 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 HSPA7P48741 367 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 LBX1P52954 281 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 RPS6KA2Q15349 733 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 ATP6AP1LQ52LC2 224 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 LY6G5CQ5SRR4 150 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 BRAT1Q6PJG6 821 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 SCIMPQ6UWF3 145 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 AHI1Q8N157 1196 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms