RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 CRTC3Q6UUV7 619 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 GLT6D1Q7Z4J2 308 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 DENND1CQ8IV53 801 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 MFSD2AQ8NA29 543 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 ABHD11Q8NFV4 315 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 ZFP90Q8TF47 636 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 TMBIM1Q969X1 311 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 ROPN1LQ96C74 230 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 RHNO1Q9BSD3 238 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 TLR9Q9NR96 1032 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 TBCCD1Q9NVR7 557 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 HTR3EA5X5Y0 456 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 MOXD2PA6NHM9 499 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 OR6C75A6NL08 312 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 SLC38A8A6NNN8 435 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 IQCF5A8MTL0 148 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 ACSL4O60488 711 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 RPL17P18621 184 aaKnown RBP12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 LCP2Q13094 533 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 MOGQ16653 247 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 PTPRNQ16849 979 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 TMTC4Q5T4D3 741 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 GALNT5Q7Z7M9 940 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 FBXO39Q8N4B4 442 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 PCSK9Q8NBP7 692 aaKnown RBP12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 FUNDC2Q9BWH2 189 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 SARS2Q9NP81 518 aaKnown RBP12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 POU2F3Q9UKI9 436 aa12.39□□□□□ -0.43
SFSWAP-208ENST00000539506 LCHNA4D1U4 455 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 GOLGA8CPA6NN73 597 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 H0YJX3 145 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 SCAMP3O14828 347 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 INSIG1O15503 277 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 NBNO60934 754 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PRAMEF12O95522 483 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 C1RP00736 705 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 RPS17P08708 135 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 GSSP48637 474 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 ATP6V0D1P61421 351 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 C18orf21Q32NC0 220 aaPredicted RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PDCD4Q53EL6 469 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 GLYATQ6IB77 296 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 BLOC1S3Q6QNY0 202 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 STAG3L4Q8TBR4 150 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 FRS2Q8WU20 508 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 EEF1AKMT1Q8WVE0 214 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 TMEM125Q96AQ2 219 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 MYOCQ99972 504 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 TDRD1Q9BXT4 1180 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 TOR3AQ9H497 397 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 RMI1Q9H9A7 625 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 INTS10Q9NVR2 710 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 ACTR3BQ9P1U1 418 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 KLQ9UEF7 1012 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 FKBPLQ9UIM3 349 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PCDHGA8Q9Y5G5 932 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 OAS3Q9Y6K5 1087 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PDE4DIPQ5VU43 2346 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 KATNA1O75449 491 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 ESRRBO95718 433 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 OXSR1O95747 527 aaPredicted RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PRR35P0CG20 571 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 CA5AP35218 305 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 VBP1P61758 197 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 INTS11Q5TA45 600 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 FUT10Q6P4F1 479 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 LINGO4Q6UY18 593 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 MILR1Q7Z6M3 343 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 ALDH16A1Q8IZ83 802 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 CADM3Q8N126 398 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 SLC22A17Q8WUG5 538 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 HTRA1Q92743 480 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 EID2BQ96D98 161 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 ZNF599Q96NL3 588 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 CORO1BQ9BR76 489 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 MAGEH1Q9H213 219 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 CARS2Q9HA77 564 aaKnown RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 SIAEQ9HAT2 523 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 TMEM161AQ9NX61 479 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 TAS2R13Q9NYV9 303 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 UBA2Q9UBT2 640 aaPredicted RBP12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PCTPQ9UKL6 214 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 RIMKLBQ9ULI2 386 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PCDHB3Q9Y5E6 796 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 PCDHA9Q9Y5H5 950 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 ANKRD36A6QL64 1941 aa12.38□□□□□ -0.43
SFSWAP-208ENST00000539506 BTN3A1O00481 513 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 GNGT2O14610 69 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 KDELR3O43731 214 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 BCAS1O75363 584 aaPredicted RBP12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 LBPP18428 481 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 HRH2P25021 359 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 HTR1BP28222 390 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 IL12AP29459 219 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 MAP2K4P45985 399 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 KCNK10P57789 538 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CCNYL2Q5T2Q4 361 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 XAF1Q6GPH4 301 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 ENPP6Q6UWR7 440 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 C16orf59Q7L2K0 433 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms