RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 FAM207AQ9NSI2 230 aaPredicted RBP8.89□□□□□ -0.99
USP28-205ENST00000537706 RMND1Q9NWS8 449 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 TRIM10Q9UDY6 481 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 PPIL1Q9Y3C6 166 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 PIKFYVEQ9Y2I7 2098 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 ALOX12BO75342 701 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 SLC25A14O95258 325 aaPredicted RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 IFNA2P01563 188 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 CBSLP0DN79 551 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 MSX1P28360 303 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 CBSP35520 551 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 DRG2P55039 364 aaKnown RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 PTSQ03393 145 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 GTF2H3Q13889 308 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 C15orf59Q2T9L4 293 aaPredicted RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 DEFB113Q30KQ7 82 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 C1orf189Q5VU69 101 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 SHEQ5VZ18 495 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 ZNF385CQ66K41 422 aaPredicted RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 HOOK3Q86VS8 718 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 KBTBD2Q8IY47 623 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 CCDC185Q8N715 623 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 CCHCR1Q8TD31 782 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 RXFP2Q8WXD0 754 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 GPR137Q96N19 417 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 SLC39A8Q9C0K1 460 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 METTL5Q9NRN9 209 aaKnown RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 FANCLQ9NW38 375 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 CNOT6Q9ULM6 557 aaKnown RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 RGSL1A5PLK6 1076 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 OR6C74A6NCV1 312 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 FAM90A27PA6NNH2 459 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 ESPNB1AK53 854 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 FAM227AF5H4B4 570 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 DFFAO00273 331 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 SOCS6O14544 535 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 ARHGEF9O43307 516 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 ATMINO43313 823 aaPredicted RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 PRAMEF1O95521 474 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 RAF1P04049 648 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 UMODP07911 640 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 CHRNB4P30926 498 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 RFC1P35251 1148 aaPredicted RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 PTPN9P43378 593 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 KPNA2P52292 529 aaKnown RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 TYRO3Q06418 890 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 STIM1Q13586 685 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 RHBDD2Q6NTF9 364 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 PHC2Q8IXK0 858 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 EMC1Q8N766 993 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 AGAP11Q8TF27 550 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 FAM172AQ8WUF8 416 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 NAA15Q9BXJ9 866 aaKnown RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 CLEC4MQ9H2X3 399 aaPredicted RBP8.88□□□□□ -0.99
USP28-205ENST00000537706 IRAK4Q9NWZ3 460 aa8.88□□□□□ -0.99
USP28-205ENST00000537706 DDX3YO15523 660 aaKnown RBP8.87□□□□□ -0.99
USP28-205ENST00000537706 DAPK3O43293 454 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 WIPF1O43516 503 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 WFS1O76024 890 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 KLHL18O94889 574 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 BRAFP15056 766 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 CA4P22748 312 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 AIF1P55008 147 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 AP2B1P63010 937 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 ALDH6A1Q02252 535 aaKnown RBP8.87□□□□□ -0.99
USP28-205ENST00000537706 TRAF2Q12933 501 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 XRCC4Q13426 336 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 KEAP1Q14145 624 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 CCDC14Q49A88 953 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 NKAIN1Q4KMZ8 207 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 TRNP1Q6NT89 227 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 SCYL2Q6P3W7 929 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 PAQR7Q86WK9 346 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 SMYD4Q8IYR2 804 aaPredicted RBP8.87□□□□□ -0.99
USP28-205ENST00000537706 DENND1AQ8TEH3 1009 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 RNF32Q9H0A6 362 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 GOLPH3LQ9H4A5 285 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 RAD18Q9NS91 495 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 PLA2G3Q9NZ20 509 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 IL17CQ9P0M4 197 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 SLC23A2Q9UGH3 650 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 CDYLQ9Y232 598 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 LUC7L2Q9Y383 392 aaKnown RBP8.87□□□□□ -0.99
USP28-205ENST00000537706 FHOD1Q9Y613 1164 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 RTTNQ86VV8 2226 aa8.87□□□□□ -0.99
USP28-205ENST00000537706 MDC1Q14676 2089 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 BECN2A8MW95 431 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 CHUKO15111 745 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 CTAG2O75638 210 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 OR2B3O76000 313 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 ZNF202O95125 648 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 HPP00738 406 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 F12P00748 615 aaPredicted RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 CYP11B1P15538 503 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PFKFB1P16118 471 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 CDH5P33151 784 aaPredicted RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 SYKP43405 635 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 SLC9A5Q14940 896 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 RPE65Q16518 533 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 CAMK4Q16566 473 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms